PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G056000.1
Common NamePHAVU_010G056000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family SBP
Protein Properties Length: 331aa    MW: 36353 Da    PI: 8.6828
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G056000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.91.1e-41192269178
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         +Cq+egC+adls+ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsrfh lsefD++krsCr+rLa+hn+rrrk+q+
  Phvul.010G056000.1 192 RCQAEGCNADLSQAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQ 269
                         6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.7E-35186254IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.376190267IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.23E-38191270IPR004333Transcription factor, SBP-box
PfamPF031103.1E-31193266IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MLDYEWGNPS SIMLTGNEET AAGASDQTHR QIFDHYASHS LIPDHFLHAP THSNATTAAA  60
ATVDYTNHHH HFNPQPHHHH LNHHHHPFFD PRAFHGASST SYPPTPSMLS LDPLPHVNAA  120
NCGPGPGPGP GGLLLVPKSE DVGRPMDFVG SRIGLNLGGR TYFSSEDDFV SRLYRRSRPA  180
ESGSAASSNS PRCQAEGCNA DLSQAKHYHR RHKVCEFHSK AATVIAAGLT QRFCQQCSRF  240
HLLSEFDNGK RSCRKRLADH NRRRRKTQQP SQEIQKSQPS LDNVARSPPD SGAQSSSVTV  300
AVSPPDYFRQ RPYQSTNPST NSSSLFFSSG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-32183266184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G056000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007134545.10.0hypothetical protein PHAVU_010G056000g
TrEMBLV7ALZ40.0V7ALZ4_PHAVU; Uncharacterized protein
STRINGXP_007134545.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68013348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.13e-76squamosa promoter binding protein-like 8