PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.010G050800.1 | ||||||||
Common Name | PHAVU_010G050800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ERF | ||||||||
Protein Properties | Length: 165aa MW: 17655.4 Da PI: 8.9472 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.9 | 1.2e-18 | 94 | 143 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +kGVr+++ +g+++AeIrdp+ ng +r++lg++ +ae Aa a+++a+ +++g Phvul.010G050800.1 94 FKGVRRRP-WGKFAAEIRDPKRNG--ARVWLGTYESAESAALAYDRAAFEMRG 143 8*******.**********98776..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.95E-29 | 92 | 153 | No hit | No description |
SMART | SM00380 | 2.7E-36 | 93 | 157 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-31 | 93 | 152 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.42 | 93 | 151 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.3E-14 | 94 | 143 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.14E-22 | 94 | 152 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.6E-12 | 94 | 105 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-12 | 133 | 153 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MNFNTTLHSH DHALLQSIQH FLLDDTQDLN ALAAVLASPD GVSPRQSDGG STSTLFTSAV 60 NSPSASLGQS TTTSTAARGE YTVARGGNAP YQNFKGVRRR PWGKFAAEIR DPKRNGARVW 120 LGTYESAESA ALAYDRAAFE MRGSKAKLNF PHLIGSHEPS HEPS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-30 | 92 | 158 | 4 | 70 | ATERF1 |
3gcc_A | 1e-30 | 92 | 158 | 4 | 70 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.010G050800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 9e-79 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007134480.1 | 1e-119 | hypothetical protein PHAVU_010G050800g | ||||
TrEMBL | V7ALT4 | 1e-117 | V7ALT4_PHAVU; Uncharacterized protein | ||||
STRING | XP_007134480.1 | 1e-118 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF512 | 33 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 2e-39 | ethylene-responsive element binding factor 13 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.010G050800.1 |
Entrez Gene | 18617471 |