PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.009G253800.1 | ||||||||
Common Name | PHAVU_009G253800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | FAR1 | ||||||||
Protein Properties | Length: 759aa MW: 86599.4 Da PI: 6.7233 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 65.8 | 1.2e-20 | 59 | 152 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnH 87 +fY+++Ak++GFs+r+++++ + + +t+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+ +w+vt +++ HnH Phvul.009G253800.1 59 EFYCSFAKQCGFSIRRHRTRGKdGVGRGVTRRDFTCHRGGFPQIKPSDDGKVQRNRKSSRCGCQAYMRIVKRAdfdVPEWRVTGFRNIHNH 149 6***************9998874556679*******************9*******************98887676789************ PP FAR1 88 ela 90 el Phvul.009G253800.1 150 ELL 152 *96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.9E-17 | 59 | 152 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 8.5E-23 | 275 | 367 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.804 | 554 | 587 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 6.8E-7 | 559 | 585 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.7E-6 | 562 | 589 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 759 aa Download sequence Send to blast |
MSEGTSLVLE SSENGTDLSQ DDIDTIEETA EETILSRQTS VNLVPFIGQR FVSQEAAYEF 60 YCSFAKQCGF SIRRHRTRGK DGVGRGVTRR DFTCHRGGFP QIKPSDDGKV QRNRKSSRCG 120 CQAYMRIVKR ADFDVPEWRV TGFRNIHNHE LLKSNEVRLL PAYCPISPDD KSRICMFAKA 180 GMSVRQMLRL MELEKGVKLG CLPFTEIDVR NLLQSFRNVD RDNDAIDLIA MCKRLKDENN 240 NFKYEFKIDS NNRLEHIAWS YSSSIQSYET FGDAVVFDTT YRVDAYDMLL GFWLGVDNNG 300 MTCFFSCALL RDENILSFSW ALKAFLGFMK GKAPQTILTD HNTWLKEAIA VELPETKHAF 360 CIWHILSKFS DWFSLLLGSQ YDEWKAEFHR LYNLELVEDF EEGWRQMVDK YGLHTNKHII 420 SLYSLRTFWA LPFLRRYFFA GLTSTCQSES INGFIQRFLS AQSQLDRFVE QVADIVDFND 480 RAGAKQKMQR KLQKACLKTG SPIESHAATV LTPYALNKLQ EELVLAPQYA SFLVDEGCFQ 540 VRHHSQSDGG CKVFWVPCQE HISCSCHLFE FSGILCRHVL RVLSTNNCFH VPDQYLPGRW 600 RGISSSSVNH FRGATSRDQP ERMQLLESMV STFLVESIET EERLDVACEQ ISMVLSRIKT 660 LPRSPHGVND IAFSYPSDSL ILPEVEDADG MIPGFTITNP HDSITTGKLK ERRARDGVDL 720 TRKRRQFSAP LCAQYGHDAT DCSIMATDNM SGDALGYL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 720 | 725 | TRKRRQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.009G253800.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007138969.1 | 0.0 | hypothetical protein PHAVU_009G253800g | ||||
Swissprot | Q9SY66 | 0.0 | FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11 | ||||
TrEMBL | V7B261 | 0.0 | V7B261_PHAVU; Uncharacterized protein | ||||
STRING | XP_007138969.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF594 | 30 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10240.1 | 0.0 | FAR1-related sequence 11 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.009G253800.1 |
Entrez Gene | 18621286 |
Publications ? help Back to Top | |||
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