PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G224800.1
Common NamePHAVU_009G224800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ARF
Protein Properties Length: 1123aa    MW: 125415 Da    PI: 6.5082
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G224800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.62e-22126227199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++  +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F  
  Phvul.009G224800.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfplldfsM-QPPA-QEIVAKDLHDSTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI- 213
                         99*****************************954.5444.48************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          ++++++l++++ r+
  Phvul.009G224800.1 214 -RDEKQQLLLGIKRA 227
                         .55788889988775 PP
2Auxin_resp1232.1e-40252334183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaas++s+F+++YnPras+seFv++++k++kal+++vs+GmRf+m+fete+s  rr +Gt++g+sdldpvrW+nS+Wr+L+
  Phvul.009G224800.1 252 AAHAASNNSPFTIFYNPRASPSEFVIPLAKYNKALYNQVSLGMRFRMMFETEESGVRRHMGTITGISDLDPVRWKNSQWRNLQ 334
                         79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.7E-43116255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.0E-41118241IPR015300DNA-binding pseudobarrel domain
CDDcd100175.60E-19125217No hitNo description
PROSITE profilePS5086312.111126228IPR003340B3 DNA binding domain
SMARTSM010192.4E-22126228IPR003340B3 DNA binding domain
PfamPF023621.0E-20126227IPR003340B3 DNA binding domain
PfamPF065071.8E-35252334IPR010525Auxin response factor
PfamPF023094.4E-99931081IPR033389AUX/IAA domain
PROSITE profilePS5174524.3559951088IPR000270PB1 domain
SuperFamilySSF542771.18E-810091073No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1123 aa     Download sequence    Send to blast
MKAPPNGYLP NSSEGERKTI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE  60
ADFVPSYPNL PSKLICMLHN VALHADPETD EVYAQMTLQP VTKYDKEAIL ASDMGLKQNQ  120
QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPLLDFSMQ PPAQEIVAKD LHDSTWTFRH  180
IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKQQL LLGIKRANRQ QPALSSSVIS  240
SDSMHIGILA AAAHAASNNS PFTIFYNPRA SPSEFVIPLA KYNKALYNQV SLGMRFRMMF  300
ETEESGVRRH MGTITGISDL DPVRWKNSQW RNLQVGWDES TAGERPSRVS IWDIEPVVTP  360
FYICPPPFFR PKFPKQPGMP DDDSDIENAF KRAMPWLGDD LGMKDASSSI FPGLSLVQWM  420
SMQQNNQFSG VQSGFMPPSM LSSNALHGNL PTDDPSKLLN FQAPVLSSPN LQFNKPNLPN  480
QVNQLQQPPT SWPPQQQQQK LQSLMPTPLN PLQQQQQRQQ QLPVLQNLSQ PQQQQPQMSQ  540
QRAQQPQQQQ QQSCQQTIMN NGAVSSNQIP NQCVQQPVTY SQLQQQQLLS GNIPPQQSFQ  600
SPNKNTLLMT SLPQDSQFQQ QIDQQASLLQ RQQQQTQLQS SPLQLLQQSL SQRAPQQPQM  660
TQMSQQNSSE QQPQLQLLQK LQQQQQQQQQ QQQQQQQQLL STSSPLLQSQ LLQQQNTHQQ  720
NQQLPQLPLS QCHQAQQLGN NAFSMEKLFN GNNYSSSSLM QTQQLPVNQS HNTQKSLTNT  780
RAPSTLTDGD APSCSTSPST NNCQISPSNL IKRNQQVPTT LGGPSVVEPT NHLIQELHRK  840
SEMQIKHELP SVRGPDQLKC KGTIADQMEA SSGTSYSIDP NNIHQNFPLP SFCMDGDVQS  900
HPRNNLPFAS NLDGLTPDTL LSRGYDSQKD LQNLLSNYGG APRDIETELS TAAITSQPFG  960
VPDMPFKPGC SSDIAINDPG VLNNGLWASQ TQRMRTYTKV QKCGSVGRCI DVTRYKGYDE  1020
LRNDLARMFG IEGQLEDPQR TEWKLVYVDH ENDILLVGDD PWEEFVSCVQ SIKILSSAEV  1080
QQMSLDGDLG HVPVPNQACS GTDNGNAWRG QYDDNSAASF NR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1691535545388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G224800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007138629.10.0hypothetical protein PHAVU_009G224800g
TrEMBLV7B1580.0V7B158_PHAVU; Auxin response factor
STRINGXP_007138629.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49183352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19