PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.009G196900.1 | ||||||||
Common Name | PHAVU_009G196900g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ERF | ||||||||
Protein Properties | Length: 212aa MW: 23974.9 Da PI: 8.5195 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.2 | 4.7e-19 | 6 | 54 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54 +++GVr+++ +g+Wv+eIr+p +r++lg+f taeeAa+a+++a+ + Phvul.009G196900.1 6 KFRGVRQRH-WGSWVSEIRHP-----LlkRRVWLGTFETAEEAARAYDQAAILMS 54 89******9.**********8.....334*********************98776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.6E-33 | 5 | 63 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.83E-33 | 6 | 65 | No hit | No description |
PROSITE profile | PS51032 | 21.944 | 6 | 63 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-39 | 6 | 69 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.9E-20 | 6 | 64 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.4E-12 | 6 | 53 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 7 | 18 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 29 | 45 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MVQTRKFRGV RQRHWGSWVS EIRHPLLKRR VWLGTFETAE EAARAYDQAA ILMSGRNAKT 60 NFPIAQTPEG DPKTLTPTQQ NNIPTTSKEL EEILHAKLRK CGKLPSPSMT CLRLDPENAH 120 IGVWQKRAGQ HSDSNWVMMV PFGNKADEGA NHSTANTSSA SSFSESGESQ QGRRQEHVRT 180 EMEEEERIAM QMIEELLSRN WPTTPSCNNM F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-16 | 6 | 63 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.009G196900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007138300.1 | 1e-158 | hypothetical protein PHAVU_009G196900g | ||||
Swissprot | Q9XI33 | 2e-71 | WIN1_ARATH; Ethylene-responsive transcription factor WIN1 | ||||
TrEMBL | V7AXK0 | 1e-156 | V7AXK0_PHAVU; Uncharacterized protein | ||||
STRING | XP_007138300.1 | 1e-157 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF576 | 33 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G15360.1 | 2e-54 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.009G196900.1 |
Entrez Gene | 18620697 |