PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G158200.1
Common NamePHAVU_009G158200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 319aa    MW: 34918.1 Da    PI: 8.6163
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G158200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.3e-181461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEde+l++++k++G g+W++ ++  g+ R++k+c++rw +yl
  Phvul.009G158200.1 14 KGAWTKEEDERLINYIKLHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                        79******************************99************97 PP
2Myb_DNA-binding58.51.5e-1867111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg++T++Edel+++++ +lG++ W++Ia++++ gRt++++k++w+++
  Phvul.009G158200.1  67 RGNFTEDEDELIINLHSLLGNK-WSLIAARLP-GRTDNEIKNYWNTH 111
                         89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-24564IPR009057Homeodomain-like
PROSITE profilePS5129418.02961IPR017930Myb domain
SMARTSM007172.8E-141363IPR001005SANT/Myb domain
SuperFamilySSF466891.58E-2913108IPR009057Homeodomain-like
PfamPF002495.5E-161461IPR001005SANT/Myb domain
CDDcd001671.27E-111661No hitNo description
PROSITE profilePS5129428.81162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.3E-2865116IPR009057Homeodomain-like
SMARTSM007179.3E-1866114IPR001005SANT/Myb domain
PfamPF002496.0E-1767111IPR001005SANT/Myb domain
CDDcd001675.24E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGRSPCCEKE HTNKGAWTKE EDERLINYIK LHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TEDEDELIIN LHSLLGNKWS LIAARLPGRT DNEIKNYWNT HIKRKLYSRG  120
IDPQTHRPLN AASATPATAA VPPPSPAAVP VATSSSNKKI NSDTVSSSNT LAHDVVITNN  180
SNNSNGFQLV SNSAYANTAT KVGTDEDSNS SSGVTVEESF PHHQLNLDLS IGLPSSHQVS  240
SSVNPEKLKA QEHDQKPHVL YKWYGNITGQ AVCLCYSLGL QSGQACYCKG VGATATTTMV  300
TTTATDSNLY RFYRPMNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-29141167108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G158200.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007137818.10.0hypothetical protein PHAVU_009G158200g
SwissprotQ388518e-90MYB6_ARATH; Transcription repressor MYB6
TrEMBLV7AVZ10.0V7AVZ1_PHAVU; Uncharacterized protein
STRINGXP_007137818.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.12e-88myb domain protein 4