PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.009G149100.1

Common Name

PHAVU_009G149100g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

C3H

Protein Properties

Length: 859aa MW: 94696.5 Da PI: 8.7791

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.009G149100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.6	8.7e-08	154	176	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t +Cr+fa+ G C++G+ C+F H+ Phvul.009G149100.1 154 TQPCRDFAA-GKCRRGSHCHFLHD 176 789****.***********6 PP
2	zf-CCCH	20.1	1.2e-06	214	235	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C +fa+ G C+ G++CkF H Phvul.009G149100.1 214 EACTNFAK-GRCRMGASCKFVHH 235 78****.***********6 PP
3	zf-CCCH	19.4	1.9e-06	279	299	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 lC+ffa G C+ G C+F+H+ Phvul.009G149100.1 279 LCKFFAN-GNCRNGKYCRFSHD 299 98888.***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	15.685	151	178	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.2E-4	151	177	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.5E-6	154	177	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.5E-5	154	176	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.422	210	238	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	8.9E-4	211	236	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.2E-4	214	235	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.375	274	301	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.6E-5	274	300	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.22E-6	276	299	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.2E-4	279	304	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 859 aa Download sequence Send to blast
MSGSGKKRSS KWDLRVDPEF SPDNSKQLRS GWSNADVAGS NSSKWSYLEG SDKLKPAMGF 60 SSKEPFSGGR GSHKDDVMNK EYGGLDATME WDEDGSYSKK ISPGSEEWKP KRHSQSPKNG 120 WSRSVRSRSR SPPHSFRWDS GVNDRNRMRS GGSTQPCRDF AAGKCRRGSH CHFLHDSQNH 180 EDSWENKSRE DGAPRYSVPH EGRDYSLKSG RSNEACTNFA KGRCRMGASC KFVHHDISDG 240 HVKVSVDELT REREIDRRHR DSSFEQGGGH GPNRSSDTLC KFFANGNCRN GKYCRFSHDR 300 QACRSPNRRL RDDRWASNPG GDHHRLDRPK LSDSDSPNRR PRDDRWGSDG NKADADKVWD 360 SPKWNDTVAV SDSAKLVEDK SENVGAAEPG FTPLPTRYGW SHNLDKSRVH GEQPFSSERK 420 EVDSWVSGNT ATNVHVSQSI GTDIWLGDTK MSPDWHYRVG SSNSIEEKHE QNKRGVKQGG 480 TYLATSERDR IQIAAGQGIN QNAESLNPLH SSGLQAVGQS QVPVPILPSK GGIIDGMPNQ 540 EVSTEKKYTA EPNIMDAGLS QVSSRNPPPT ENLVGQEQLA QLTNLSASLA HILGTGQQLP 600 QLYAALNSHY AKDASSLAKA EVSAMPVSNT FIRPDPAVPA SNTFIHPDPA VGLPKPYDPM 660 CDSVEQKSAV ASGIPPSIPP SKRVAEDVLE IPLQLSNTSR QNRGDSSKAA GSEELVKSDT 720 LIQLQPGQNT GVDKDNNKEV LPEERHKSRD DPKSTKENGP LENMEQTGGP DDAKKTKDLK 780 GIRAFKFALV EFVKELLKPT WKEGQITKDD YKTIVKKVVD KVTGSMQGAN IPQTQEKIDN 840 YLSFSKPKLN KLVQVSGG*

Sequence ? help Back to Top

Protein Sequence Length: 859 aa Download sequence Send to blast

MSGSGKKRSS KWDLRVDPEF SPDNSKQLRS GWSNADVAGS NSSKWSYLEG SDKLKPAMGF  60
SSKEPFSGGR GSHKDDVMNK EYGGLDATME WDEDGSYSKK ISPGSEEWKP KRHSQSPKNG  120
WSRSVRSRSR SPPHSFRWDS GVNDRNRMRS GGSTQPCRDF AAGKCRRGSH CHFLHDSQNH  180
EDSWENKSRE DGAPRYSVPH EGRDYSLKSG RSNEACTNFA KGRCRMGASC KFVHHDISDG  240
HVKVSVDELT REREIDRRHR DSSFEQGGGH GPNRSSDTLC KFFANGNCRN GKYCRFSHDR  300
QACRSPNRRL RDDRWASNPG GDHHRLDRPK LSDSDSPNRR PRDDRWGSDG NKADADKVWD  360
SPKWNDTVAV SDSAKLVEDK SENVGAAEPG FTPLPTRYGW SHNLDKSRVH GEQPFSSERK  420
EVDSWVSGNT ATNVHVSQSI GTDIWLGDTK MSPDWHYRVG SSNSIEEKHE QNKRGVKQGG  480
TYLATSERDR IQIAAGQGIN QNAESLNPLH SSGLQAVGQS QVPVPILPSK GGIIDGMPNQ  540
EVSTEKKYTA EPNIMDAGLS QVSSRNPPPT ENLVGQEQLA QLTNLSASLA HILGTGQQLP  600
QLYAALNSHY AKDASSLAKA EVSAMPVSNT FIRPDPAVPA SNTFIHPDPA VGLPKPYDPM  660
CDSVEQKSAV ASGIPPSIPP SKRVAEDVLE IPLQLSNTSR QNRGDSSKAA GSEELVKSDT  720
LIQLQPGQNT GVDKDNNKEV LPEERHKSRD DPKSTKENGP LENMEQTGGP DDAKKTKDLK  780
GIRAFKFALV EFVKELLKPT WKEGQITKDD YKTIVKKVVD KVTGSMQGAN IPQTQEKIDN  840
YLSFSKPKLN KLVQVSGG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.009G149100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	0.0	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007137708.1	0.0	hypothetical protein PHAVU_009G149100g
TrEMBL	V7AVN2	0.0	V7AVN2_PHAVU; Uncharacterized protein
STRING	XP_007137708.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4099	32	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	1e-07	C3H family protein

Link Out ? help Back to Top
Phytozome	Phvul.009G149100.1
Entrez Gene	18620204