PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.009G137000.1 | ||||||||
Common Name | PHAVU_009G137000g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ERF | ||||||||
Protein Properties | Length: 342aa MW: 38280.6 Da PI: 4.5221 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62 | 1.3e-19 | 104 | 154 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+W+AeIrdp r r +lg+++taeeAa +++a+ +l+g Phvul.009G137000.1 104 KKFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIRLRG 154 59********.**********82....35*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.78E-33 | 104 | 161 | No hit | No description |
SuperFamily | SSF54171 | 2.42E-21 | 105 | 162 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.591 | 105 | 162 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.8E-13 | 105 | 154 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-29 | 105 | 162 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.2E-38 | 105 | 168 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-10 | 106 | 117 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-10 | 128 | 144 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MEESILCKHT VHHTVTKKLL SPKKSQTNPT TDRRIVRVSY TDPDATDSSS DDEPFPFVRQ 60 RIKRYVNQIE IETATIAAPN VLSNARKRPA AEPCRRQVKL HSGKKFRGVR QRPWGKWAAE 120 IRDPARRVRL WLGTYDTAEE AAMVYDNAAI RLRGPDALTN FVTPPLKEPP PAAAEDVSEL 180 KVGVPEEASG SMYGYDSGDD HCHHNLASPT SVLHFRSNSS EENSEKTEEV LRECQGETET 240 SLFDETGEFL ALDNLPAWDD VFNFETPEYP LVFEEEHVLD ESQMLGETLA FSSNEGFSDT 300 SSILLADSLI DFDKACPPST FCQVDDYFQD ILLASDPLVL L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-22 | 103 | 167 | 3 | 65 | ATERF1 |
3gcc_A | 1e-22 | 103 | 167 | 3 | 65 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00456 | DAP | Transfer from AT4G27950 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.009G137000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007137563.1 | 0.0 | hypothetical protein PHAVU_009G137000g | ||||
Swissprot | Q9SUE3 | 4e-54 | CRF4_ARATH; Ethylene-responsive transcription factor CRF4 | ||||
TrEMBL | V7AV72 | 0.0 | V7AV72_PHAVU; Uncharacterized protein | ||||
STRING | XP_007137563.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF450 | 34 | 161 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 3e-45 | cytokinin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.009G137000.1 |
Entrez Gene | 18620080 |
Publications ? help Back to Top | |||
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