PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G133700.1
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 332aa    MW: 37808.9 Da    PI: 8.7906
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G133700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.4e-181560147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        rg W + Ede+l ++v+q+G  +W++Ia++++ gR++k+c++rw++ 
  Phvul.009G133700.1 15 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQ 60
                        899*****************************.***********996 PP
2Myb_DNA-binding60.34.2e-1967110146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         r ++T+eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ 
  Phvul.009G133700.1  67 RRPFTEEEEERLLAAHRIHGNK-WALIARLFP-GRTDNAVKNHWHV 110
                         679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.5881061IPR017930Myb domain
SMARTSM007178.4E-151463IPR001005SANT/Myb domain
SuperFamilySSF466891.16E-2914108IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-271668IPR009057Homeodomain-like
CDDcd001674.83E-141859No hitNo description
PfamPF139212.6E-171878No hitNo description
PROSITE profilePS5129428.36662116IPR017930Myb domain
SMARTSM007172.4E-1666114IPR001005SANT/Myb domain
CDDcd001679.27E-869109No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2169115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEDSSAGEDP KTCPRGHWRP AEDEKLRQLV EQYGAQNWNS IAEKLQGRSG KSCRLRWFNQ  60
LDPRINRRPF TEEEEERLLA AHRIHGNKWA LIARLFPGRT DNAVKNHWHV IMARKQREQS  120
KLCGKRSFQD VYNDSNTFLE KRTPQSHQDL LFSTRFGLEN GRFFDFRSLD NNKDNNNNNN  180
RIVADTTPSS SLASWNFASV PTTTNGSAVV DRKGGRDYFN GSSCSSSVYL SECSRSSDRS  240
FLRIYPNPAF SLPNYKRVVP TSPFSFLGSD NDGRIKRDLL MSFCDNNSST FTKLKASTEK  300
DHQQQTTEDE TIIEPKEVPF IDFLGVGVSS S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-32151157107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G133700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017421415.10.0PREDICTED: transcription factor LAF1-like
TrEMBLA0A4D6NTU00.0A0A4D6NTU0_VIGUN; Myb proto-oncogene protein
STRINGXP_007137516.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.11e-63myb domain protein 52