PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G122700.1
Common NamePHAVU_009G122700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRAS
Protein Properties Length: 502aa    MW: 55233.8 Da    PI: 6.1152
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G122700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3342.8e-1021104941374
                GRAS   1 lvelLlecAeavss..gdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsv.....selykalppsetsekn...sseela 79 
                         lv+lL+++Aea++   ++  la+ +L rl++l   + +g++m+Rlaayft AL+  l + +     s+  + +++ + ++++   + ++la
  Phvul.009G122700.1 110 LVHLLMAAAEALTGatKSRDLARVILVRLKDLvsHAAHGSNMERLAAYFTDALQGLLEGAGgahnnSKHHHYITCGSHHPRDdhhQNDTLA 200
                         68**********87336666************44445679****************9863311111222233333333333344699**** PP

                GRAS  80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLa 166
                         a+++++++sP++kf+h+taNqaIleav++e+rvHi+D+di++G+QW++L+qaLas ++gpp  +lRiT++++  +g  s  +++etg+rL+
  Phvul.009G122700.1 201 AFQMLQDMSPYVKFGHFTANQAILEAVAHERRVHIVDYDIMEGVQWASLMQALASNKAGPPgpHLRITALSRTGTGrrSVATVQETGRRLT 291
                         ******************************************************999777666*********88879999*********** PP

                GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                          fA++lg pf f+    +  e++++++L++ +gEal+ n++l+l +l  +    ++ + ++L+  ++l+P++v++ve+e+  + + F+ rf
  Phvul.009G122700.1 292 AFAASLGQPFTFHQCRLDPDETFKPSSLKLVRGEALVFNCMLNLPHLSYR---APDSIASFLSGARELKPRLVTLVEEEVGSSVGGFVGRF 379
                         **************9999****************************9844...4444569******************************* PP

                GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg 348
                         +e l++ysa+fdslea++p + ++r+ vEr++lg++iv  +a   +  +e +   ++W e+l+++GF+ vp+s  + +qaklll  ++ dg
  Phvul.009G122700.1 380 MELLHHYSAVFDSLEAGFPMQGRARALVERVFLGPRIVGSLARIYRTGEELQ--ERSWGEWLGASGFRGVPMSFANHCQAKLLLGLFN-DG 467
                         ******************************************9998855554..59********************************.** PP

                GRAS 349 yrveee.sgslvlgWkdrpLvsvSaWr 374
                         yrvee   + lvl Wk+r+L+s+S W+
  Phvul.009G122700.1 468 YRVEELgANRLVLDWKSRRLLSASLWT 494
                         ****98678999**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.15584474IPR005202Transcription factor GRAS
PfamPF035149.6E-100110494IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MEIDMDYHTD AIHSLHFSGY ATITDTTPSS DDDYDCNWNH WSPLVNWDAF TGPHDDFHHL  60
IDSIVSDGAT AEYLSPDDHA ASNSPSPSIT EEDDAEEETA AADDSKGLRL VHLLMAAAEA  120
LTGATKSRDL ARVILVRLKD LVSHAAHGSN MERLAAYFTD ALQGLLEGAG GAHNNSKHHH  180
YITCGSHHPR DDHHQNDTLA AFQMLQDMSP YVKFGHFTAN QAILEAVAHE RRVHIVDYDI  240
MEGVQWASLM QALASNKAGP PGPHLRITAL SRTGTGRRSV ATVQETGRRL TAFAASLGQP  300
FTFHQCRLDP DETFKPSSLK LVRGEALVFN CMLNLPHLSY RAPDSIASFL SGARELKPRL  360
VTLVEEEVGS SVGGFVGRFM ELLHHYSAVF DSLEAGFPMQ GRARALVERV FLGPRIVGSL  420
ARIYRTGEEL QERSWGEWLG ASGFRGVPMS FANHCQAKLL LGLFNDGYRV EELGANRLVL  480
DWKSRRLLSA SLWTSSSSDS H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A9e-55964974381Protein SCARECROW
5b3h_D9e-55964974381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G122700.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007137382.10.0hypothetical protein PHAVU_009G122700g
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLV7AYQ30.0V7AYQ3_PHAVU; Uncharacterized protein
STRINGXP_007137382.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62643152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-146GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]