PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G033800.1
Common NamePHAVU_009G033800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 306aa    MW: 34287.9 Da    PI: 6.5191
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G033800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH421.7e-13120171155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Phvul.009G033800.1 120 QRTTHIAVERNRRKQMNEYLAVLRSLMPSS---YVQRGDQASIIGGAINFVKELE 171
                         79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.04E-13118175No hitNo description
PROSITE profilePS5088815.04119170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.37E-17119186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.7E-11120171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-14120183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-10125176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MALEAVVFPP YACKDYFYSL VGAAPNFGFQ AAEEEKLLLG IINTNIEHNL YANLDSSSTT  60
ILQNVKEQQW DSHSSPEACT IDESTIPPPS SSAEATATTT SRRKRRRTKS EKNKEEIENQ  120
RTTHIAVERN RRKQMNEYLA VLRSLMPSSY VQRGDQASII GGAINFVKEL EQVLQSMEGE  180
KRRKQGEENV GAFAEFFTFP QYTTRGTQKQ EQKEWAVADI EVTMVDSHAN LKILSKKQPS  240
HLMKIVLGLQ SLRLTILHLN VTTLHHMVLY SISVKVEEGC ELNTVDEIAA AVNQLLGTIQ  300
QVAFN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102106RKRRR
2102107RKRRRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G033800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-171AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007136288.10.0hypothetical protein PHAVU_009G033800g
SwissprotQ9C7T47e-88BH096_ARATH; Transcription factor bHLH96
TrEMBLV7ARK20.0V7ARK2_PHAVU; Uncharacterized protein
STRINGXP_007136288.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.11e-86bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]