PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.009G026200.1 | ||||||||
Common Name | PHAVU_009G026200g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ARF | ||||||||
Protein Properties | Length: 552aa MW: 60630.3 Da PI: 6.943 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.4 | 1.3e-23 | 122 | 223 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f k+ltpsd+++ g +++p+ +a+++ + ++ + l+++d +g +We+++i+r++++r++lt+GW+ Fv+ ++L +gD+v+F+ Phvul.009G026200.1 122 FAKILTPSDANNGGGFSVPRFCADSIfppldydEDPPVQ--NLSVTDVHGFTWEFRHIFRGTPRRHLLTTGWSTFVNNKKLVAGDSVLFM- 209 89*********************999****997666666..6************************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 ++ +++l+v+++r+ Phvul.009G026200.1 210 -KNADKRLLVGIRRA 223 .6788889*****97 PP | |||||||
2 | Auxin_resp | 87 | 3.6e-29 | 272 | 355 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a ++ FevvY+P+a++seFvvk+e v +a+++ + GmR+km++et+dss++++ +Gtv++vs ++ +W S+Wr+L+ Phvul.009G026200.1 272 AAELAVRNMQFEVVYYPKAGWSEFVVKTEVVDAAMRIAWRDGMRVKMSVETDDSSRTTWfQGTVSAVSYQENGQWCSSPWRMLQ 355 577788999*************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.01E-29 | 113 | 235 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.1E-35 | 117 | 234 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.68E-19 | 121 | 222 | No hit | No description |
Pfam | PF02362 | 2.7E-21 | 122 | 223 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.5E-18 | 122 | 224 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.548 | 122 | 224 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.8E-26 | 272 | 355 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 552 aa Download sequence Send to blast |
MPRQPPPPPP QQPGALEAAV WQACAGPSVE IPKPNSMVYY FAQGHFDQAS SPPRNVSSAV 60 LARPFVTCNV VAVRFLADPL TDEVFAKMVL QPVANVFAAA AAPLHNHAAA PPQKDDKEVV 120 SFAKILTPSD ANNGGGFSVP RFCADSIFPP LDYDEDPPVQ NLSVTDVHGF TWEFRHIFRG 180 TPRRHLLTTG WSTFVNNKKL VAGDSVLFMK NADKRLLVGI RRATRFAPGR GSCVKLRLID 240 EEEEEEEEKE EVRGVFSRDG KGKLSAKEVV EAAELAVRNM QFEVVYYPKA GWSEFVVKTE 300 VVDAAMRIAW RDGMRVKMSV ETDDSSRTTW FQGTVSAVSY QENGQWCSSP WRMLQVTWDE 360 PEGLQNAKWV SPWQVELVST TPALHSAFPS PKRLRTANGS WVYANGEGDL FSMTGFTNPA 420 MGHLNQALWS YSTFPAGMQG ARHDVFSASS FSSYPRDMSH LGMCNSFGNS TFSRLNNLSI 480 DPSPDSRSSL HSCVIDTVGN HKSNSTKPVS DSFQLFGAVI RKEQPVQSSL TGTGCASTGD 540 KKALEYKGSY L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 5e-67 | 15 | 376 | 50 | 388 | Auxin response factor 5 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.009G026200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007136195.1 | 0.0 | hypothetical protein PHAVU_009G026200g | ||||
TrEMBL | V7ARK7 | 0.0 | V7ARK7_PHAVU; Auxin response factor | ||||
STRING | XP_007136195.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4030 | 30 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77850.1 | 1e-137 | auxin response factor 17 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.009G026200.1 |
Entrez Gene | 18618933 |