PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G014100.1
Common NamePHAVU_009G014100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family DBB
Protein Properties Length: 273aa    MW: 29846.4 Da    PI: 7.2468
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G014100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.32.6e-07443538
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                         C+ +++++++lfC+ ++  lC+ C    H+       H+
  Phvul.009G014100.1  4 QCDVCNKHQASLFCTADEAALCDACDHRVHHAnklaskHQ 43
                        7******99*******************964446666676 PP
2zf-B_box23.89.6e-085695437
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                        + C+ ++e ++  fC++++  lC++C  ++H+       H
  Phvul.009G014100.1 56 PLCDVCQERRAFVFCQQDRAILCKECDGSIHSAneltknH 95
                        57*****************************655555556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011911.007147IPR000315B-box-type zinc finger
CDDcd000214.92E-7347No hitNo description
PfamPF006438.5E-6443IPR000315B-box-type zinc finger
SMARTSM003367.3E-7447IPR000315B-box-type zinc finger
SMARTSM003365.1E-1553100IPR000315B-box-type zinc finger
PROSITE profilePS501199.82653100IPR000315B-box-type zinc finger
CDDcd000218.85E-956100No hitNo description
PfamPF006437.7E-65696IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MKIQCDVCNK HQASLFCTAD EAALCDACDH RVHHANKLAS KHQRFSLTHP SAKHFPLCDV  60
CQERRAFVFC QQDRAILCKE CDGSIHSANE LTKNHSRFLL TGIKFSASLL PYSSSSSLSS  120
SSSPKKNPVL DSSHPLSNPP STPSPPKPGG NLQTNQEPGF TGSSISEYLI NTIPGMKFED  180
FLDSHSTFAC SKNGDEMCSL FGEENMVSFS PGGIWVPQAP PSSAAYWEQT SEQNGYKERR  240
EGSIRSSLGD DNFVVPQMSP PSNVSKRSKV LW*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G014100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-142AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007136054.10.0hypothetical protein PHAVU_009G014100g
SwissprotQ9LQZ72e-63BBX21_ARATH; B-box zinc finger protein 21
TrEMBLV7ATW20.0V7ATW2_PHAVU; Uncharacterized protein
STRINGXP_007136054.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14483494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.12e-60salt tolerance homolog2
Publications ? help Back to Top
  1. Xu D, et al.
    BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60
    [PMID:27325768]
  2. Xu DB, et al.
    The G-Protein Ī² Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 inĀ Arabidopsis.
    Mol Plant, 2017. 10(9): p. 1206-1223
    [PMID:28827171]
  3. Xu D,Jiang Y,Li J,Holm M,Deng XW
    The B-Box Domain Protein BBX21 Promotes Photomorphogenesis.
    Plant Physiol., 2018. 176(3): p. 2365-2375
    [PMID:29259103]
  4. Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
    Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
    Plant Physiol., 2018. 176(4): p. 2963-2976
    [PMID:29439209]
  5. Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF
    Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum.
    Plant Physiol., 2018. 177(1): p. 369-380
    [PMID:29555784]
  6. Kang X, et al.
    HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture.
    Plant Cell Environ., 2018. 41(8): p. 1912-1925
    [PMID:29748960]