PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.009G004300.2 | ||||||||
Common Name | PHAVU_009G004300g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | SRS | ||||||||
Protein Properties | Length: 216aa MW: 23743.5 Da PI: 8.7325 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 88.2 | 1.8e-27 | 14 | 65 | 4 | 55 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqq 55 +++CqdCGnqakk+C+++RCRtCCk++gf+C+th++stW p++krr+ q Phvul.009G004300.2 14 RGSKCQDCGNQAKKECSYSRCRTCCKNKGFKCQTHIRSTWTPVDKRRNTEQP 65 5679*******************************************97554 PP | |||||||
2 | DUF702 | 75.2 | 1.9e-23 | 90 | 142 | 102 | 154 |
DUF702 102 tsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++P +s+a+frcv+v+s+dd+ +e+aYqt+v+igGhvf+GiLydqG+e+ Phvul.009G004300.2 90 EMKFPGAANSMAMFRCVQVRSMDDAVNEVAYQTSVNIGGHVFSGILYDQGPEQ 142 345************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 5.4E-42 | 15 | 141 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.2E-23 | 17 | 59 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 1.0E-20 | 92 | 140 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MKRGTQGEEE VVSRGSKCQD CGNQAKKECS YSRCRTCCKN KGFKCQTHIR STWTPVDKRR 60 NTEQPPSPPH NFHGDVPQKH NQINPYSGLE MKFPGAANSM AMFRCVQVRS MDDAVNEVAY 120 QTSVNIGGHV FSGILYDQGP EQGYNHKGGS SSGLVDEQQR NNLGLMNNAS IHSRDSSGVT 180 IASAGHGEPL FPPPPYPFPL ASFRPGMPYF TYPRS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.009G004300.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 1e-118 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007135937.1 | 1e-162 | hypothetical protein PHAVU_009G004300g | ||||
TrEMBL | V7AUN5 | 1e-161 | V7AUN5_PHAVU; Uncharacterized protein | ||||
STRING | XP_007135936.1 | 1e-147 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66350.1 | 2e-42 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | Phvul.009G004300.2 |
Entrez Gene | 18618709 |