PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G260900.2
Common NamePHAVU_008G260900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C3H
Protein Properties Length: 491aa    MW: 53332.3 Da    PI: 6.7673
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G260900.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.71.8e-07272292526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C+ f++ G C+ Gd C +aHg
  Phvul.008G260900.2 272 PCPEFRK-GSCSKGDACEYAHG 292
                         8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.205.9E-1644183IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.13E-1469158IPR020683Ankyrin repeat-containing domain
PfamPF127966.7E-769141IPR020683Ankyrin repeat-containing domain
SMARTSM002483274104IPR002110Ankyrin repeat
PROSITE profilePS5029716.5274173IPR020683Ankyrin repeat-containing domain
CDDcd002045.94E-1276152No hitNo description
PROSITE profilePS5008812.476109144IPR002110Ankyrin repeat
SMARTSM002484.9E-4109141IPR002110Ankyrin repeat
SMARTSM003568.6E-5267293IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-4270294IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-5272292IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.094272294IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-4300330IPR000571Zinc finger, CCCH-type
SMARTSM0035626302325IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.437302326IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MCGVSKGKPS QIGLVMEEEC GKEGMHHRIS ALLEFSAADD LIGFKEAVEK EGHDVDGVGL  60
WYGRRAGSKR IGYEERTALM VASTFGSLDV SAYILGTGRV DVTRASRSDG ATALHCAVAG  120
GSAASVEIVK LLLDASADVS AVDADGNRPI DLIVSVANSI FSPRARVLQA LLEGTCDAAD  180
QTCFSLPQVI DQIEEQRQET TTPRVSKDYP IDLSLPDIKN GIYGTDEFRM YTFKVKPCSR  240
AYSHDWTECP FVHPGENARR RDPRKYHYSC VPCPEFRKGS CSKGDACEYA HGIFECWLHP  300
AQYRTRLCKD ESGCTRRVCF FAHKAEELRP LYASTGSAIP SPRSYSISAS ALEMGSVSPI  360
ALGSPSILIP PASKPPLTPS GASSPVNGSI WSQSNVAVPT LQLPKSRLKA ASAARDVDLD  420
FELLGLEAHR RRQQLMMDEM SGLSSPTNWK NSMPNSPSFR VSLSDHIGEL NRLSGDLSYN  480
LQLESKCVRT *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G260900.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007142204.10.0hypothetical protein PHAVU_008G260900g
SwissprotQ9LUZ41e-170C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLV7BBG90.0V7BBG9_PHAVU; Uncharacterized protein
STRINGXP_007142205.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-165C3H family protein