PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.008G246000.2 | ||||||||
Common Name | PHAVU_008G246000g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ERF | ||||||||
Protein Properties | Length: 251aa MW: 27793.9 Da PI: 6.3997 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 67.5 | 2.4e-21 | 94 | 144 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GVr+++ +grW+AeIrdp ++rkr +lg+f+taeeAa +++a+ kl+g Phvul.008G246000.2 94 SKFRGVRQRP-WGRWAAEIRDP---NRRKRLWLGTFDTAEEAATEYDKAAVKLKG 144 79********.**********8...335************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 5.7E-84 | 7 | 250 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
SuperFamily | SSF54171 | 1.5E-22 | 94 | 153 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.89E-33 | 94 | 152 | No hit | No description |
Pfam | PF00847 | 3.5E-14 | 94 | 144 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.302 | 95 | 152 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-37 | 95 | 158 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.3E-31 | 95 | 153 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-10 | 96 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-10 | 118 | 134 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MSVHSTVNLH PMNLATPNSH FDDNPPCKTK TKTQKRLLRI IITDHDATDS DSDDEQQQNN 60 PKARKVKREI TQITSKCRKP KKPPPSSEAA NGRSKFRGVR QRPWGRWAAE IRDPNRRKRL 120 WLGTFDTAEE AATEYDKAAV KLKGPNAVTN FPLTTPPPAA ASPFAAIDSF STDGGASYSD 180 LVASPTSVLT YDCDSTPFDS FPYGNVDALG FHIDAPLSLA DVDVALTCHH GKEEEAFDEF 240 DLDEFMKWPY * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-20 | 96 | 153 | 3 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 5e-20 | 96 | 153 | 6 | 64 | ATERF1 |
3gcc_A | 5e-20 | 96 | 153 | 6 | 64 | ATERF1 |
5wx9_A | 3e-19 | 94 | 152 | 13 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.008G246000.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007142024.1 | 0.0 | hypothetical protein PHAVU_008G246000g | ||||
TrEMBL | V7BAX8 | 0.0 | V7BAX8_PHAVU; Uncharacterized protein | ||||
STRING | XP_007142025.1 | 1e-158 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 4e-28 | cytokinin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.008G246000.2 |
Entrez Gene | 18623928 |