PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.008G246000.1 | ||||||||
Common Name | PHAVU_008G246000g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ERF | ||||||||
Protein Properties | Length: 281aa MW: 30843.2 Da PI: 6.0961 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 67.3 | 2.9e-21 | 124 | 174 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GVr+++ +grW+AeIrdp ++rkr +lg+f+taeeAa +++a+ kl+g Phvul.008G246000.1 124 SKFRGVRQRP-WGRWAAEIRDP---NRRKRLWLGTFDTAEEAATEYDKAAVKLKG 174 79********.**********8...335************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 4.1E-86 | 7 | 280 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
Pfam | PF00847 | 4.3E-14 | 124 | 174 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.54E-33 | 124 | 182 | No hit | No description |
SuperFamily | SSF54171 | 1.83E-22 | 124 | 183 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.302 | 125 | 182 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-37 | 125 | 188 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.2E-31 | 125 | 183 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-10 | 126 | 137 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-10 | 148 | 164 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MSVHSTVNLH PMNLATPNSH FDDNPPCKTK TKTQKRLLRI IITDHDATDS DSDDEQQQNN 60 PKARKVKREI TQISMHLPLP DNSFSSCSYS SASASVSTCS SEQASKCRKP KKPPPSSEAA 120 NGRSKFRGVR QRPWGRWAAE IRDPNRRKRL WLGTFDTAEE AATEYDKAAV KLKGPNAVTN 180 FPLTTPPPAA ASPFAAIDSF STDGGASYSD LVASPTSVLT YDCDSTPFDS FPYGNVDALG 240 FHIDAPLSLA DVDVALTCHH GKEEEAFDEF DLDEFMKWPY * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-20 | 126 | 183 | 3 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.008G246000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007142025.1 | 0.0 | hypothetical protein PHAVU_008G246000g | ||||
TrEMBL | V7B863 | 0.0 | V7B863_PHAVU; Uncharacterized protein | ||||
STRING | XP_007142025.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5585 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 1e-27 | cytokinin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.008G246000.1 |
Entrez Gene | 18623928 |