PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.008G222600.1 | ||||||||
Common Name | PHAVU_008G222600g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | MYB | ||||||||
Protein Properties | Length: 240aa MW: 27489.9 Da PI: 6.679 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.5 | 1.3e-17 | 10 | 55 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ed l ++v+++G+++W+ I++ ++ gR++k+c++rw + Phvul.008G222600.1 10 KGSWSPQEDATLMKLVNEHGPRNWSVISSGIP-GRSGKSCRLRWCNQ 55 799*****************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 53.4 | 5.7e-17 | 64 | 106 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ede++++a++ +G++ W+tI+r + gRt++ +k++w++ Phvul.008G222600.1 64 PFSPMEDEIIIKAHAVHGNK-WATISRLLS-GRTDNAIKNHWNST 106 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.545 | 5 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.81E-29 | 8 | 103 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.4E-15 | 9 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-18 | 10 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-24 | 11 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.15E-13 | 12 | 54 | No hit | No description |
SMART | SM00717 | 4.0E-14 | 61 | 109 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.505 | 61 | 111 | IPR017930 | Myb domain |
CDD | cd00167 | 1.05E-10 | 64 | 107 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-22 | 64 | 110 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.7E-13 | 64 | 106 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MRDGGDDRVK GSWSPQEDAT LMKLVNEHGP RNWSVISSGI PGRSGKSCRL RWCNQLSPDV 60 RHRPFSPMED EIIIKAHAVH GNKWATISRL LSGRTDNAIK NHWNSTLRRR GTTEHSSSSS 120 AASPSTKRPS PLELCYPLKK QRVEKENEEE CMAIPLMKPL SLFPSGEKSE GEMMEEEEKE 180 EEREVEEFEV NNINTASDQD YFLQMMQQMI ADEVRNYVDS LRHQRQHEII HPGLKFHPK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-35 | 9 | 110 | 3 | 104 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.008G222600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007141751.1 | 1e-180 | hypothetical protein PHAVU_008G222600g | ||||
TrEMBL | V7B855 | 1e-178 | V7B855_PHAVU; Uncharacterized protein | ||||
STRING | XP_007141751.1 | 1e-179 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11600 | 29 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 8e-55 | myb domain protein 73 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.008G222600.1 |
Entrez Gene | 18623686 |