PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G222400.1
Common NamePHAVU_008G222400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 330aa    MW: 36041.1 Da    PI: 8.4744
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G222400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-1857106255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+WvAeIr+p++   r+r +lg+f tae+Aa+a+++a++ l+g
  Phvul.008G222400.1  57 RYRGVRQRS-WGKWVAEIREPRK---RTRKWLGTFATAEDAARAYDRAALILYG 106
                         59****999.**********954...5**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.55E-2057114No hitNo description
SuperFamilySSF541719.81E-2157114IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-2957114IPR001471AP2/ERF domain
SMARTSM003807.3E-3657120IPR001471AP2/ERF domain
PROSITE profilePS5103222.56357114IPR001471AP2/ERF domain
PfamPF008473.0E-1257104IPR001471AP2/ERF domain
PRINTSPR003672.5E-105869IPR001471AP2/ERF domain
PRINTSPR003672.5E-108096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006970Biological Processresponse to osmotic stress
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009744Biological Processresponse to sucrose
GO:0009749Biological Processresponse to glucose
GO:0010119Biological Processregulation of stomatal movement
GO:0010353Biological Processresponse to trehalose
GO:0010449Biological Processroot meristem growth
GO:0010896Biological Processregulation of triglyceride catabolic process
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0032880Biological Processregulation of protein localization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048316Biological Processseed development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MASLQPQPQE TKPTATTATP STPSQTSNTS NSTNDTTNNK STRKCKGKGG PDNNKFRYRG  60
VRQRSWGKWV AEIREPRKRT RKWLGTFATA EDAARAYDRA ALILYGSRAQ LNLEPSGSSP  120
HSSSSRTTSS TQTLRPLLPR PTGFAFNFPF HAAALPYPCA GVYATTFNYT HQVMCPNENS  180
NNTVHVHHHH HRRPEEVVQV SHALSTSYQN SESDVSLGGN NTTADSSSRS TSYQRHGHQD  240
NNRVHAQHSD SSKHQQHQNS VVDGVDSAVG SGESSQVNME ASVDPDLSLV GTVGLGSSSS  300
VWPLASEADY SGSLWDYNDP FFFDPSEKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-1858113359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00674SELEXTransfer from GRMZM2G093595Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G222400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0472800.0KM047280.1 Phaseolus vulgaris cultivar Jalo ABI4 genetic marker genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007141749.10.0hypothetical protein PHAVU_008G222400g
TrEMBLV7BA590.0V7BA59_PHAVU; Uncharacterized protein
STRINGXP_007141749.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88472940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.12e-28ERF family protein