PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G220400.1
Common NamePHAVU_008G220400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 381aa    MW: 42145.1 Da    PI: 4.6982
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G220400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.53e-1778128155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         + y+GVr++  +g+Wv eIr+p   + r  r +lg+f ta+eAa a+++a+++++g
  Phvul.008G220400.1  78 CNYRGVRQRT-WGKWVGEIREP---N-RgSRLWLGTFSTAQEAALAYDEAARAMYG 128
                         56*****999.**********8...3.35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.8E-1278128IPR001471AP2/ERF domain
CDDcd000183.30E-3378137No hitNo description
SuperFamilySSF541714.58E-2179137IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.7E-3279137IPR001471AP2/ERF domain
PROSITE profilePS5103221.9779136IPR001471AP2/ERF domain
SMARTSM003803.4E-3679143IPR001471AP2/ERF domain
PRINTSPR003672.6E-108091IPR001471AP2/ERF domain
PRINTSPR003672.6E-10102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MGAYDQVSLR PLDSSRKRKS RSRGDGSRSV AETIAKWKEY NEHLYSGKDD GRSTRKAPAK  60
GSKKGCMKGK GGPQNYQCNY RGVRQRTWGK WVGEIREPNR GSRLWLGTFS TAQEAALAYD  120
EAARAMYGPS ARLNFPDISD YASVKESFKD SFMAASSSCS SAASDTSTTS NRSEVCAAED  180
AKENTLHVLD KVNHNDCHRA YDYASPTSRM KLEPKDEAVD RPEPGAGQGI HHTEQAEDVN  240
KDQMDFSWID AFDFNDDYSK SFSNDELFQV DELLGLIDNN PVDDSGLMQG LDFGQIGFPG  300
DNNPQVGDTS SSFFYQLQNP DAKLLGSLPH MEQTPSGFDY GLDFMKTVVP DEYNGGEEPQ  360
FLNLDDVLNH DSKGMEASKE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-1879136260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11419SRKRKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G220400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007141729.10.0hypothetical protein PHAVU_008G220400g
TrEMBLV7BA430.0V7BA43_PHAVU; Uncharacterized protein
STRINGXP_007141729.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.12e-43ERF family protein