PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G220000.1
Common NamePHAVU_008G220000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family B3
Protein Properties Length: 332aa    MW: 39218.8 Da    PI: 4.8416
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G220000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.53.2e-15999196
                        EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3  1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91
                        ffk++ p+ +++  r+v+p +f+++       + + +++l++ sg +W vk   r  + ++++++GWk F  +n +   Df++Fk+dg++ f 
  Phvul.008G220000.1  9 FFKIFFPEKHSE--RMVIPSSFVKSRrlR-RRRIPEDIILRNVSGGVWCVKT--RLVGHKIYFQEGWKVFQAENCIGKADFLLFKYDGTNVF- 95
                        788887766655..69*******999852.4457889***************..6666679**************************99888. PP

                        .EEEE CS
                  B3 92 lvvkv 96
                         +v +
  Phvul.008G220000.1 96 -KVVI 99
                        .5554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-185103IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-176102IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.1117103IPR003340B3 DNA binding domain
CDDcd100178.39E-157100No hitNo description
PfamPF023624.7E-12999IPR003340B3 DNA binding domain
SMARTSM010194.0E-159103IPR003340B3 DNA binding domain
SuperFamilySSF1019368.04E-9203324IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-7277327IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.301289329IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MTTAAKKYFF KIFFPEKHSE RMVIPSSFVK SRRLRRRRIP EDIILRNVSG GVWCVKTRLV  60
GHKIYFQEGW KVFQAENCIG KADFLLFKYD GTNVFKVVIL EQSSRCERRE VEEDEVIDIT  120
EEEENEKTED YVMEDEEDSD YENEYYEDED DNYTEMEEES EEEHMKSQNH HSRASNRDSA  180
TSSIPKIEGP HLEDYEFDPQ MYIQPENPYF EAKLYKNRPN ELHIPANVLR ESSLTFPEEI  240
TLSRCKCFQR EDIRRNELGD NHLGFSRQTP MYSEVTKVSE WQDGRVCIKG WTNFCTKNKI  300
KENDVCICEI VSGKHQIVRT LQVHVLGARN E*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G220000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-124AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007141725.10.0hypothetical protein PHAVU_008G220000g
TrEMBLV7B7D70.0V7B7D7_PHAVU; Uncharacterized protein
STRINGXP_007141725.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF128521124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.17e-13B3 family protein