PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.008G208300.1

Common Name

PHAVU_008G208300g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

FAR1

Protein Properties

Length: 875aa MW: 99397.2 Da PI: 6.8791

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.008G208300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	49.7	1.2e-15	56	130	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYneYA++vGFs + ++ +sk +ge + +fvC +e +++ ++ C+a+++++k+ ++kw+vt++++eH+H++a Phvul.008G208300.1 56 FYNEYARRVGFSCKAGSHGRSKADGENMYWEFVCGREDLKRKLAES--------------CTAMIRIEKKGQNKWVVTQFVKEHSHSMA 130 *********************************99988877666..............************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-12	56	130	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.2E-28	272	364	IPR018289	MULE transposase domain
Pfam	PF04434	3.6E-11	550	584	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.226	550	586	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.7E-8	561	588	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 875 aa Download sequence Send to blast
MGEGSDHQAM ADDGNVEHIE GGVNNAENNS GSHVEVGVSE PYVGREFDSE DAAKTFYNEY 60 ARRVGFSCKA GSHGRSKADG ENMYWEFVCG REDLKRKLAE SCTAMIRIEK KGQNKWVVTQ 120 FVKEHSHSMA SLSKVHSIRP RRHFSSVGRT MPETYQGVGL VPSGVMYVSM DKNCIPTKNI 180 HGIRNIPAVA TISETAHLVK SPSMMNYAVR PTIQKRTLGR DAHNLLEYFK KMQAENPGFF 240 YAIQLDDDNH MSNVFWADAR SRTAYGHFGD AVTMDTTYRI NQYRVPFALF TGVNHHSQMI 300 LFGCALLLDD SEASFVWLFK TFLTAMNDRY PVSITTDQDR AIQTAISQVF PQTRHCISKW 360 HVLREGHEKL AYVCNMHPNF QIELYNCINL TETIEEFDSC WNFIMNKYEL TKNDWLQSLY 420 NARAQWVPAY FRDSFFAVIS PNQGIDGSFF YGFLNHQATL PVFFRQYEQA LENWFEKELE 480 TDYETISSTP VLKTPSPMEK QAANLYTRKI FSKFQEELVE TFAYTANRIE EDGESSIFRV 540 AKFDDDQKAY VVTLNLSELR ADCSCQMFEY SGILCRHVLT VFTVTNVLTL PSHYILKRWT 600 RNAKSSEHAG ESHVHDSLAS RYSNLCWEAI KYAEEGAMNV ETHDTAIGAL RESAKKISFM 660 KRSVAKVSPP SHPVSWTAYD DRKSPTSTAD TNPLLWPQQD ETTKRFNLND ASTPVQSVAD 720 LNLPRMTPVS LQRDDGPPEN MVVYPCLKSL TWVMENKNST PGNRVAVINL KLQDYSKNPS 780 TESEVKFNLS KVTLEPLFNH MVNIRDQLSA PTRKFAVLNL KLPVADTNTG ACEVKFQVSK 840 DTLVAVLRSM DYIREQLSVP GDAQTEAISK RPRK*

Sequence ? help Back to Top

Protein Sequence Length: 875 aa Download sequence Send to blast

MGEGSDHQAM ADDGNVEHIE GGVNNAENNS GSHVEVGVSE PYVGREFDSE DAAKTFYNEY  60
ARRVGFSCKA GSHGRSKADG ENMYWEFVCG REDLKRKLAE SCTAMIRIEK KGQNKWVVTQ  120
FVKEHSHSMA SLSKVHSIRP RRHFSSVGRT MPETYQGVGL VPSGVMYVSM DKNCIPTKNI  180
HGIRNIPAVA TISETAHLVK SPSMMNYAVR PTIQKRTLGR DAHNLLEYFK KMQAENPGFF  240
YAIQLDDDNH MSNVFWADAR SRTAYGHFGD AVTMDTTYRI NQYRVPFALF TGVNHHSQMI  300
LFGCALLLDD SEASFVWLFK TFLTAMNDRY PVSITTDQDR AIQTAISQVF PQTRHCISKW  360
HVLREGHEKL AYVCNMHPNF QIELYNCINL TETIEEFDSC WNFIMNKYEL TKNDWLQSLY  420
NARAQWVPAY FRDSFFAVIS PNQGIDGSFF YGFLNHQATL PVFFRQYEQA LENWFEKELE  480
TDYETISSTP VLKTPSPMEK QAANLYTRKI FSKFQEELVE TFAYTANRIE EDGESSIFRV  540
AKFDDDQKAY VVTLNLSELR ADCSCQMFEY SGILCRHVLT VFTVTNVLTL PSHYILKRWT  600
RNAKSSEHAG ESHVHDSLAS RYSNLCWEAI KYAEEGAMNV ETHDTAIGAL RESAKKISFM  660
KRSVAKVSPP SHPVSWTAYD DRKSPTSTAD TNPLLWPQQD ETTKRFNLND ASTPVQSVAD  720
LNLPRMTPVS LQRDDGPPEN MVVYPCLKSL TWVMENKNST PGNRVAVINL KLQDYSKNPS  780
TESEVKFNLS KVTLEPLFNH MVNIRDQLSA PTRKFAVLNL KLPVADTNTG ACEVKFQVSK  840
DTLVAVLRSM DYIREQLSVP GDAQTEAISK RPRK*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.008G208300.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	0.0	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007141585.1	0.0	hypothetical protein PHAVU_008G208300g
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	V7B6X1	0.0	V7B6X1_PHAVU; Uncharacterized protein
STRING	XP_007141585.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Link Out ? help Back to Top
Phytozome	Phvul.008G208300.1
Entrez Gene	18623539

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]