PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G182100.1
Common NamePHAVU_008G182100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB_related
Protein Properties Length: 252aa    MW: 28351.7 Da    PI: 8.4496
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G182100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.11e-08195243147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47 
                         r +W+++Ed +l dav+++G g+W++  r+     +R+  q+  rw ++
  Phvul.008G182100.1 195 REPWSEQEDMQLRDAVQRWGEGNWASMIRRDDfpINRSTSQLSKRWSTL 243
                         789**********************976655566778888888888766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.592190248IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-10192245IPR009057Homeodomain-like
SuperFamilySSF466893.04E-10192245IPR009057Homeodomain-like
SMARTSM007172.0E-8194246IPR001005SANT/Myb domain
PfamPF002491.7E-7195243IPR001005SANT/Myb domain
CDDcd116606.61E-12197245No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MANKHGKVKV PFSEENAASL LQRYDARTLL TLLQELANYP HSKFNWNDLV AKTSTGISNA  60
REYQMLWRHL AYGQSMENLD HDAQPLDDDS DLEGEREALP RLKRETATEA AAFVQVIIAS  120
FKLSESTPTS SVIQAPLIIN APKCDSSNKE SSRTQDTDII FPVTVKRKTL PNASSTRVVE  180
ASGSVSGNTS IKKKREPWSE QEDMQLRDAV QRWGEGNWAS MIRRDDFPIN RSTSQLSKRW  240
STLRKREGDI N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G182100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150368e-74AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007141273.10.0hypothetical protein PHAVU_008G182100g
TrEMBLV7B5T00.0V7B5T0_PHAVU; Uncharacterized protein
STRINGXP_007141273.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31223256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.19e-59MYB_related family protein