PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.008G179200.1 | ||||||||
Common Name | PHAVU_008G179200g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 262aa MW: 28416.7 Da PI: 6.9249 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 97.7 | 8.7e-31 | 52 | 108 | 3 | 60 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 +vrY+eC+kNhA+s GghavDGC+Efmp+ ge+gt +a+ CaAC+CHRnFHR+e + e Phvul.008G179200.1 52 AVRYRECQKNHAVSFGGHAVDGCCEFMPA-GEDGTLEAVICAACNCHRNFHRKEIDGE 108 69**************************9.999********************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 1.0E-20 | 53 | 106 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.6E-28 | 53 | 105 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.4E-27 | 54 | 105 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.366 | 55 | 104 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 8.97E-21 | 185 | 257 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.1E-31 | 186 | 257 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.7E-25 | 199 | 256 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MEFDDQEEQE EEMGMPEPPV PAPVASYDSL GNSAARSKVG GEGRKGAFGA GAVRYRECQK 60 NHAVSFGGHA VDGCCEFMPA GEDGTLEAVI CAACNCHRNF HRKEIDGEMT SFHHRAQPPP 120 PPLHHHHQFS PYYHHRVPQH PAAAGYLHHH LATPPMAQHR PLALPAAASG GGLSREDEDI 180 SNPSSSGGGG GGGGGGGSKK RFRTKFTQEQ KDKMLAFAEQ LGWRIQKHDE SAVEQFCAET 240 NVERKVLKVW MHNNKNTLVC L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-29 | 198 | 257 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 197 | SGGGGGGGGGGGS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.008G179200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007141241.1 | 0.0 | hypothetical protein PHAVU_008G179200g | ||||
Swissprot | Q9SB61 | 9e-73 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | V7B6P5 | 0.0 | V7B6P5_PHAVU; Uncharacterized protein | ||||
STRING | XP_007141241.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 3e-63 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.008G179200.1 |
Entrez Gene | 18623240 |
Publications ? help Back to Top | |||
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