PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.008G174200.1 | ||||||||
Common Name | PHAVU_008G174200g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | C2H2 | ||||||||
Protein Properties | Length: 233aa MW: 26322.1 Da PI: 10.1973 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.9 | 2e-06 | 87 | 106 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r nL+ H+ Phvul.008G174200.1 87 FSCPVCLKTFNRYNNLQMHM 106 89*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.71E-5 | 82 | 109 | No hit | No description |
PROSITE profile | PS50157 | 10.18 | 87 | 114 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 9.7E-6 | 87 | 106 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 89 | 109 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MNQNQLQPLP LLSSFLGSSP QEALLQNQNP KAYHGQVEDV TVALHIGLPN NSGGSTNNQG 60 FVNATTHVPS NYWIPTQEQI LIGFSHFSCP VCLKTFNRYN NLQMHMWGHG SQYRRGPDSL 120 KRTHPRPLLD IPCYCCSRGC KNNIDHPRAK PLKDFRTLQT HFKRKHGAKP FTCRKCAKPL 180 AVKGDWRTHE KNCGKRWLCI CGSDFKHKRS LKDHIRAFGF GHTPFTSSSD AM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 117 | 122 | DSLKRT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.008G174200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007141186.1 | 1e-175 | hypothetical protein PHAVU_008G174200g | ||||
Swissprot | Q8VWG3 | 4e-97 | TT1_ARATH; Protein TRANSPARENT TESTA 1 | ||||
TrEMBL | V7B6K9 | 1e-174 | V7B6K9_PHAVU; Uncharacterized protein | ||||
STRING | XP_007141186.1 | 1e-175 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF170 | 34 | 289 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34790.1 | 1e-97 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.008G174200.1 |
Entrez Gene | 18623189 |
Publications ? help Back to Top | |||
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