PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G168700.1
Common NamePHAVU_008G168700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ARF
Protein Properties Length: 538aa    MW: 59098.9 Da    PI: 6.4657
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G168700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.11.4e-22116217199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f k+ltpsd+++ g +++p+ +a++          ++ +   l+++d +g  W++++iyr++++r+++t+GW++Fv+ ++L +gD+vvF  
  Phvul.008G168700.1 116 FSKILTPSDANNGGGFSVPRFCADSVfppldfrADPPVQ--LLSVTDVHGVAWRFRHIYRGTPRRHLFTTGWSKFVNHKKLIAGDSVVFV- 203
                         88*****************9999999*****97556555..7************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          ++s+++  v+++r+
  Phvul.008G168700.1 204 -KDSDGNVSVGIRRA 217
                         .7799999****997 PP
2Auxin_resp71.13.3e-24255332182
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 
                         aa+ ++ + +FevvY+P+a+ ++Fvv++e ve+a+k+ +  GmR+k+ +etedss+ ++ +Gtv++  ++d+      +Wr+L
  Phvul.008G168700.1 255 AAECVARNAPFEVVYYPKAGFADFVVSAEVVEDAMKCAWVGGMRVKIGMETEDSSRMTWfQGTVTSAYASDN-----GPWRML 332
                         67789999************************************************************9777.....555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-34105219IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.16E-30110223IPR015300DNA-binding pseudobarrel domain
CDDcd100172.15E-19115216No hitNo description
SMARTSM010199.1E-19116218IPR003340B3 DNA binding domain
PfamPF023621.0E-20116217IPR003340B3 DNA binding domain
PROSITE profilePS5086312.351116218IPR003340B3 DNA binding domain
PfamPF065077.5E-21255332IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MPPPQPRRVD PKIWRACAGA AVHIPKLHSR VYYFPQGHME HASPSHSLSP AYRSPPFVLC  60
HVSSRDLLAD PFSDEVFAKL LLTPLPHPFH HNQNDDSNSQ NEDEDDRDCQ NGVVSFSKIL  120
TPSDANNGGG FSVPRFCADS VFPPLDFRAD PPVQLLSVTD VHGVAWRFRH IYRGTPRRHL  180
FTTGWSKFVN HKKLIAGDSV VFVKDSDGNV SVGIRRATRF VSSSSLVEAE QPPAQGEGFS  240
RSATGRVSPK AVAAAAECVA RNAPFEVVYY PKAGFADFVV SAEVVEDAMK CAWVGGMRVK  300
IGMETEDSSR MTWFQGTVTS AYASDNGPWR MLQVNWDEPE VLQNAKRVSP WQVELVSPSL  360
APHPAFSPSK RFRADQGSGL LSDREGDPFF PMTGFPNSTM GNMDKRLLSY DTFPAGMQGA  420
RHDLFSASSF SNFLNDNSYM YMGSTSFGNN TVQSLGIVST ELNMSSSQSD DLSPHSQSSL  480
HSFDTEFTGT RQCNTKVGSG SILLFGKIIQ PAETHLHDAA DYMERDGSRG NKETEDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A5e-651235422353Auxin response factor 1
4ldw_A5e-651235422353Auxin response factor 1
4ldw_B5e-651235422353Auxin response factor 1
4ldy_A5e-651235422353Auxin response factor 1
4ldy_B5e-651235422353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G168700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007141116.10.0hypothetical protein PHAVU_008G168700g
SwissprotQ84WU61e-159ARFQ_ARATH; Auxin response factor 17
TrEMBLV7B6C20.0V7B6C2_PHAVU; Auxin response factor
STRINGXP_007141116.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40303056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-142auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]