PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G165200.1
Common NamePHAVU_008G165200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRAS
Protein Properties Length: 456aa    MW: 49761 Da    PI: 6.0216
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G165200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS341.91.1e-104814521374
                GRAS   1 lvelLlecAeavss..gdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                         lv+lL+++Aea+++  ++++la+ +L rl+el+sp+  ++++Rlaa+f  AL++ l +   + +++++ ++ +    +++l+a++l++++s
  Phvul.008G165200.1  81 LVHLLMAAAEALTTgtESHHLARVILVRLNELVSPTHgTNIERLAAHFSSALQNLLDG--AGSSHTITNNTPN---PTDTLTAFHLLQDMS 166
                         68***********9445667************8886559******************9..5555555555554...78999********** PP

                GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg...skeeleetgerLakfAeelgv 174
                         P++kf+h+taNqaIleav++e+rvHi+Dfd+++G+QW++L+q+L+sR+ gpp  +lRiT++++ +++   s  +++etg+rL+ fA+++  
  Phvul.008G165200.1 167 PYVKFAHFTANQAILEAVAHEKRVHIVDFDVTEGAQWASLMQSLSSRSTGPPgpHLRITALSRGSASgrrSIATVQETGRRLTAFAASVAQ 257
                         ************************************************887667*********8888899999****************** PP

                GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyy 264
                         pf+f+    +  e+++++ L++ +gEal+ n++l+l +l       +    ++Lk  k+l+P+vv vve+e+ + +++ F+  f++++++y
  Phvul.008G165200.1 258 PFSFHQCRLDPGETFRPSLLKLIRGEALVFNCMLHLPHLS---FRASGSVASFLKGAKELNPRVVLVVEEEVARgGDAGFVGLFMDSVQHY 345
                         ******9999**************************9986...333333456*******************99999*************** PP

                GRAS 265 salfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee. 354
                         sa+fdsle+++p ++ +r+ vEr++lg++i n v    ++    +e+ ++W+e+l++aGF+ vp+s  + +qa+lll  ++ dgyrvee  
  Phvul.008G165200.1 346 SAVFDSLEVGFPMQKWARALVERVFLGPRIANSVGLMYQS---GEEERGSWEEWLGAAGFRGVPVSFANHCQANLLLGLFN-DGYRVEELg 432
                         **********************************999998...677789********************************.******987 PP

                GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                         ++ lvlgWk+r+L+s+S+W+
  Phvul.008G165200.1 433 NNKLVLGWKSRRLISASVWT 452
                         99999**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.33155432IPR005202Transcription factor GRAS
PfamPF035143.9E-10281452IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MDDPDFLDFS NRSITTSASS EEDWTNLWSP VVDWGSLAAG EDNFQTLFDS IVHKDDVVLT  60
PDQTTAQDSD LSGHDEKGLR LVHLLMAAAE ALTTGTESHH LARVILVRLN ELVSPTHGTN  120
IERLAAHFSS ALQNLLDGAG SSHTITNNTP NPTDTLTAFH LLQDMSPYVK FAHFTANQAI  180
LEAVAHEKRV HIVDFDVTEG AQWASLMQSL SSRSTGPPGP HLRITALSRG SASGRRSIAT  240
VQETGRRLTA FAASVAQPFS FHQCRLDPGE TFRPSLLKLI RGEALVFNCM LHLPHLSFRA  300
SGSVASFLKG AKELNPRVVL VVEEEVARGG DAGFVGLFMD SVQHYSAVFD SLEVGFPMQK  360
WARALVERVF LGPRIANSVG LMYQSGEEER GSWEEWLGAA GFRGVPVSFA NHCQANLLLG  420
LFNDGYRVEE LGNNKLVLGW KSRRLISASV WTSNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-567445512382Protein SCARECROW
5b3h_A3e-567445511381Protein SCARECROW
5b3h_D3e-567445511381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G165200.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007141073.10.0hypothetical protein PHAVU_008G165200g
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLV7B5820.0V7B582_PHAVU; Uncharacterized protein
STRINGXP_007141073.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62643152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-129GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]