PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G159400.1
Common NamePHAVU_008G159400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 321aa    MW: 36312.8 Da    PI: 5.2018
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G159400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.4e-19105155155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         ++++GVr+++ +g+W+AeIrdp +   r r++lg+f+taeeAa  +++a+  l+g
  Phvul.008G159400.1 105 KKFRGVRQRP-WGKWAAEIRDPAK---RMRIWLGTFDTAEEAALVYDNAAITLRG 155
                         59********.**********844...69***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.31E-33105163No hitNo description
PROSITE profilePS5103223.472106163IPR001471AP2/ERF domain
PfamPF008473.9E-12106155IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-22106164IPR016177DNA-binding domain
SMARTSM003805.4E-39106169IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-30106164IPR001471AP2/ERF domain
PRINTSPR003671.3E-10107118IPR001471AP2/ERF domain
PRINTSPR003671.3E-10129145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEQQQQQNSI LCKYTVHKCF MKKHTKPKTT SRLPKVISIS VTDPFATDSS SDDEKPPRRR  60
VKRYVNRIEL PLACKAVASK KRHAGESTAI RAPEPGRVDN SGNEKKFRGV RQRPWGKWAA  120
EIRDPAKRMR IWLGTFDTAE EAALVYDNAA ITLRGPDALT NFATNQEKEA TEKEDPTGKR  180
EMNVVVKPET EVSDYDSSEE CCHNLPSPTS VLRFNDPEKP AQPFAGRSGA VEEFEGEMLS  240
FHENREFLLQ DMLWDDVFNF PVIFDEPVSH LFDETTRFSV NDGFVAITDS EEKYSPSKSL  300
CQVDDYFQDI LLGSDPLVAL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-21105162159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-21105162462ATERF1
3gcc_A1e-21105162462ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G159400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007141007.10.0hypothetical protein PHAVU_008G159400g
TrEMBLV7B9510.0V7B951_PHAVU; Uncharacterized protein
STRINGXP_007141007.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-53cytokinin response factor 4