PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G094400.1
Common NamePHAVU_008G094400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRAS
Protein Properties Length: 560aa    MW: 62389.3 Da    PI: 4.6262
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G094400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS112.55.5e-351935583374
                GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                         +lL +  ea+++g+++la+ +L  +s+ asp g++++Rl++y+ +++ ++           l+ ++ +     +   a +++++  Pi k+
  Phvul.008G094400.1 193 HLLEAYGEALEQGQKSLAEVILRCMSQKASPLGESLERLVFYLSQGMTNHGDY--------LKGEAFK-----NFEPASRALYQGLPIGKI 270
                         77888899***************************************998766........4444443.....44456789********** PP

                GRAS  94 shltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfef 178
                         + ++a +aIlea+ ++ + vH +Df i++G+ W++L++a+a  +    +l++T ++   +g     s  +  et++ L + A+++g++++ 
  Phvul.008G094400.1 271 ADFAAVSAILEAMPQDcTGVHLVDFCIGNGVRWASLIEAIAHMN---KTLKLTSIKWDGEGlecgsSPSSFDETKRHLYEHAKSCGLKLKV 358
                         *************98879***********************965...46******99777799999999********************99 PP

                GRAS 179 nvlvakrledl..eleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvksl.....sPkvvvvveqe.adh..nsesFlerf 257
                         +    k +++l  e+++++ +   gE la n+++ l ++   +v ++ +  ++Lk+ ++l     s  ++++ +   ++   n+ +F   f
  Phvul.008G094400.1 359 EE---KGVKELvaEIKKMDKRGgrGEFLAFNSMIDLPHMG--RVRTRRQALQFLKVAQDLintsgSRGIITFGDGGaCEKvkNNLNFRSFF 444
                         87...4444442256666555477***************9..5555555699***999984444344699999987544457999****** PP

                GRAS 258 lealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.s 346
                         +  l +y al+ s+e+ +p+   e+ri +E+ +l++ i+++   ++ e  +r   +e       e  +k  +ls+++ ++++ +lr  + s
  Phvul.008G094400.1 445 TVHLLHYQALLQSIESHFPSRFsEARIAMEQLFLQPCISSLDWLQTWEEMQRGDPVE------AEISLKGCQLSKNILMEIREVLRGSEgS 529
                         ****************9998755****************999988888555555444......46667889******************77 PP

                GRAS 347 dgyrve.eesgslvlgWkdrpLvsvSaWr 374
                          + r+e +++++lvl  k+ +L+ +S W+
  Phvul.008G094400.1 530 YEARIEgQNDNELVLEYKGIQLLRFSTWK 558
                         7888988889******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098519.211165536IPR005202Transcription factor GRAS
PfamPF035141.9E-32193558IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MMQQEDMQSP CSFFEDMNST FESGVESCAF TGYDPSVDSC AFTVYDHVGD CVPYGFSVDD  60
HVGDCGLNTL LSSLQDSTSE ICSIPFSSSP LVFSNDHIHI QYPINEETVQ LPSLMELDDL  120
DSILDTEIAS FQGHGYLRES EGSFFPSQNL SSEVENAWSP TPSVRSELST NQTSPLNLPH  180
ENKEIENQVS LPHLLEAYGE ALEQGQKSLA EVILRCMSQK ASPLGESLER LVFYLSQGMT  240
NHGDYLKGEA FKNFEPASRA LYQGLPIGKI ADFAAVSAIL EAMPQDCTGV HLVDFCIGNG  300
VRWASLIEAI AHMNKTLKLT SIKWDGEGLE CGSSPSSFDE TKRHLYEHAK SCGLKLKVEE  360
KGVKELVAEI KKMDKRGGRG EFLAFNSMID LPHMGRVRTR RQALQFLKVA QDLINTSGSR  420
GIITFGDGGA CEKVKNNLNF RSFFTVHLLH YQALLQSIES HFPSRFSEAR IAMEQLFLQP  480
CISSLDWLQT WEEMQRGDPV EAEISLKGCQ LSKNILMEIR EVLRGSEGSY EARIEGQNDN  540
ELVLEYKGIQ LLRFSTWKN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G094400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007140222.10.0hypothetical protein PHAVU_008G094400g
TrEMBLV7B6Y10.0V7B6Y1_PHAVU; Uncharacterized protein
STRINGXP_007140222.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-10GRAS family protein