PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.008G092800.1 | ||||||||
Common Name | PHAVU_008G092800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ERF | ||||||||
Protein Properties | Length: 526aa MW: 58645.3 Da PI: 5.9263 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.6 | 3e-18 | 74 | 131 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.....krkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr++ +g+WvAeIr+p + g k r +lg+f ta eAa a+++a+k+++g Phvul.008G092800.1 74 CKFRGVRQRI-WGKWVAEIREPIN-GklvgeKANRLWLGTFSTALEAALAYDEAAKAMYG 131 79*****998.**********855.55976666************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.64E-31 | 74 | 140 | No hit | No description |
Pfam | PF00847 | 3.5E-13 | 74 | 131 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.9E-28 | 75 | 140 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-17 | 75 | 139 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.654 | 75 | 139 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.5E-35 | 75 | 145 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-8 | 76 | 87 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-8 | 105 | 121 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 526 aa Download sequence Send to blast |
MKTNTNVSGE RKSRKRRSSG NDSVENTLEK WKEYNRQQQL GSRENGAEVI HKVPAKGSRK 60 GCMRGKGGPQ NSDCKFRGVR QRIWGKWVAE IREPINGKLV GEKANRLWLG TFSTALEAAL 120 AYDEAAKAMY GPSARLNFPE PSVEPVDSNG SSSSGCDKKS PSDSSENDDD VAKAELERNL 180 HQPHEEKPRF SEIGVFEVTE EKQVLSGGCV ADESIEDLKE TTTGFEQCQI NLKNIKSEMP 240 EKSEGIDREL ERVLKNSGLG EKGNNLLQKE PVEIPMNTGA NYCSSSDAAE HDIVEKSEET 300 RAESVETLKS CELSCSNHCL GYMHNMLPDS NTRPHSEHFN NTQTEVSIAR KHTEEVISEI 360 LGLCHSKCLK ISHDQTPHEP YRTEHFDEMR TKLKCLECKL KAHSIHYKNQ APVVGDSNYP 420 SMQGIHMFGG GTVGPIESMS QIDAMNNINT SRNSLPGFSS GHSRKLCDLS QQLHKLGGYL 480 PEHWNNMQFA DLEVGYDYSF LNPDYDFGLL EEQKLLDVCF PQIGS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-16 | 76 | 139 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 12 | 17 | SRKRRS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.008G092800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007140202.1 | 0.0 | hypothetical protein PHAVU_008G092800g | ||||
TrEMBL | V7B6W7 | 0.0 | V7B6W7_PHAVU; Uncharacterized protein | ||||
STRING | XP_007140202.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13286 | 21 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38340.1 | 1e-32 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.008G092800.1 |
Entrez Gene | 18622329 |