PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G054800.2
Common NamePHAVU_008G054800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C3H
Protein Properties Length: 409aa    MW: 44795.4 Da    PI: 8.4188
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G054800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.71.4e-112147127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                        ++++ C+++ rtG C++G++C+F+H+p
  Phvul.008G054800.2 21 PGEPDCSYYIRTGLCRFGATCRFNHPP 47
                        5789*********************97 PP
2zf-CCCH38.12.6e-126892327
                        S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                        +++C+++++tGtCk+G++C+F+H++
  Phvul.008G054800.2 68 QPECQYYLKTGTCKFGATCRFHHPR 92
                        799********************96 PP
3zf-CCCH37.54e-12114138327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C +++rtG+Ck+G++CkF+H++
  Phvul.008G054800.2 114 EPECAYYLRTGQCKFGNTCKFHHPQ 138
                         799********************97 PP
4zf-CCCH38.52e-12270295227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         +++ C+f+++tG Ck+G+ C+F+H++
  Phvul.008G054800.2 270 DQPDCQFYMKTGDCKFGAVCRFHHPR 295
                         6899********************96 PP
5zf-CCCH38.22.4e-12315341127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++lC f++r+G+Ck+G++CkF H++
  Phvul.008G054800.2 315 PGEPLCVFYSRYGICKFGPSCKFDHPM 341
                         589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.2E-42047IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9762148IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-82247IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-52548IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-42646IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.2536593IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-66592IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-96892IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-66994IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-57192IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.619111139IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5111138IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6114139IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-10114138IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4117137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.718268296IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-5268295IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-9270295IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5271297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4274296IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821314342IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7314341IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-9316341IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5317341IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-4319339IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MWQINLRSSE TMESGPYPEH PGEPDCSYYI RTGLCRFGAT CRFNHPPNRK LAIAAARMKG  60
EFPERIGQPE CQYYLKTGTC KFGATCRFHH PRDKAGIAGR VALNILGYPL RPNEPECAYY  120
LRTGQCKFGN TCKFHHPQPS NMVLSMRSSP VYPTVQSPTT PGQQSYATGI TNWPSSSYIP  180
SPRWQSPSSY APLILPQGMV SVPGWSAYSG QMGSDSSQQT MGNGQSYGTN RQSEPTNAGS  240
QGAYSQFRSG SVPVGFYALP RENIFPERPD QPDCQFYMKT GDCKFGAVCR FHHPRERMIP  300
APDCVLSPIG LPLRPGEPLC VFYSRYGICK FGPSCKFDHP MGVFTYNISA SPSADAPGRR  360
LLGSSSGTSA LNLSSEGLIE SGSANPRRLS LSETRQIPSG DDNIDEEG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G054800.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6241380.0EU624138.1 Medicago sativa zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007139732.10.0hypothetical protein PHAVU_008G054800g
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLV7B5J70.0V7B5J7_PHAVU; Uncharacterized protein
STRINGXP_007139732.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-177zinc finger protein 1