PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G045100.1
Common NamePHAVU_008G045100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HD-ZIP
Protein Properties Length: 293aa    MW: 32359.1 Da    PI: 7.5051
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G045100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.42.8e-19134188256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ ++tkeq  +Lee F+++++++ ++++ LA++l+L+ rqV vWFqNrRa+ k
  Phvul.008G045100.1 134 RKKLRLTKEQSMVLEETFKEHNTLNPKRKQTLAEELNLKPRQVEVWFQNRRARTK 188
                         678899***********************************************98 PP
2HD-ZIP_I/II127.27.3e-41134224192
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +kk+rl+keq+ +LEe+F+e+++L+p+rK++la+eL+l+prqv+vWFqnrRARtk+kq+E+d+++Lk+++++l+e+n+rL+kev+eLr +l
  Phvul.008G045100.1 134 RKKLRLTKEQSMVLEETFKEHNTLNPKRKQTLAEELNLKPRQVEVWFQNRRARTKLKQTEVDCDFLKKCCESLTEDNRRLQKEVQELR-AL 223
                         69*************************************************************************************9.55 PP

         HD-ZIP_I/II  92 k 92 
                         k
  Phvul.008G045100.1 224 K 224
                         5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046186.1E-18199IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.607.5E-20118184IPR009057Homeodomain-like
SuperFamilySSF466892.1E-19120191IPR009057Homeodomain-like
PROSITE profilePS5007117.653130190IPR001356Homeobox domain
SMARTSM003894.1E-17132194IPR001356Homeobox domain
PfamPF000469.8E-17134188IPR001356Homeobox domain
CDDcd000861.41E-16134191No hitNo description
PROSITE patternPS000270165188IPR017970Homeobox, conserved site
PfamPF021832.0E-11190224IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.3E-25190233IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MAEKDDGVGL SLSLSLGVNQ QPLKVNHMQH PQHQQQPQPG PINHNTTLFA DLFQLPDRSS  60
DVIRGIEVKS TAYCEEDNGI SSPNSVVSSV SGSKRNERDD DNAAMVAGER TSCSRGSDDD  120
DGGGGDGGDG DGGRKKLRLT KEQSMVLEET FKEHNTLNPK RKQTLAEELN LKPRQVEVWF  180
QNRRARTKLK QTEVDCDFLK KCCESLTEDN RRLQKEVQEL RALKSSPQMY MHMNPPTTLT  240
MCPSCERGHS SSSSSPATVH SSAPTTRKLF GANIRRPVAV NTWPFDGSIP RQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182190RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G045100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-118AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007139620.10.0hypothetical protein PHAVU_008G045100g
SwissprotP466025e-82HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLV7B1970.0V7B197_PHAVU; Uncharacterized protein
STRINGXP_007139620.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123934105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.17e-67homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]