PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G038500.1
Common NamePHAVU_008G038500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB_related
Protein Properties Length: 154aa    MW: 17395.7 Da    PI: 9.1992
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G038500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.42.8e-122341347
                        HHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding 13 vdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        ++++k+lG++ W++Ia +++ gRt +++k++w++y
  Phvul.008G038500.1  2 IRLHKLLGNR-WSLIAGRLP-GRTSNDVKNYWNTY 34
                        689*******.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.071139IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-15236IPR009057Homeodomain-like
SuperFamilySSF466891.09E-9242IPR009057Homeodomain-like
SMARTSM007170.0091237IPR001005SANT/Myb domain
PfamPF002492.0E-10234IPR001005SANT/Myb domain
CDDcd001675.82E-8234No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MIRLHKLLGN RWSLIAGRLP GRTSNDVKNY WNTYTRRKLH THNKVKQSTL KPHEVIKPVP  60
KALSKTCPKL LQGNVINSSK VGVSEQGVTS SSNWWETLLD EKGENNITVN NTCFSGEKDG  120
VFELWNQELT SIDSHFLTEA ETWSDMFLDL GVN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G038500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007139539.11e-110hypothetical protein PHAVU_008G038500g
TrEMBLV7B3T31e-108V7B3T3_PHAVU; Uncharacterized protein
STRINGXP_007139539.11e-109(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.13e-19myb domain protein 6