PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.008G037900.2 | ||||||||
Common Name | PHAVU_008G037900g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | NAC | ||||||||
Protein Properties | Length: 355aa MW: 39993.8 Da PI: 5.7925 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.7 | 5.3e-54 | 16 | 142 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lp GfrFhPtdeel+++yL+kkv ++ + + +i e+d++k+ePw+Lp +k +e+ewy+F+ rdkky+tg r+nrat++gyWkatgkd+e Phvul.008G037900.2 16 LPTGFRFHPTDEELIKHYLTKKVVDNCFCA-VAIGEADLNKCEPWNLPGLAKMGETEWYYFCVRDKKYPTGLRANRATEAGYWKATGKDRE 105 699***********************9877.67***************8888899************************************ PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +++ +++l+g+kktLvfykgrapkgekt+Wvmheyrle Phvul.008G037900.2 106 IIA-ENALIGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 142 ***.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.27E-61 | 12 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.604 | 16 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.0E-28 | 17 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MENVCKTSKE NQQLKLPTGF RFHPTDEELI KHYLTKKVVD NCFCAVAIGE ADLNKCEPWN 60 LPGLAKMGET EWYYFCVRDK KYPTGLRANR ATEAGYWKAT GKDREIIAEN ALIGMKKTLV 120 FYKGRAPKGE KTNWVMHEYR LEGIQNQHKS AKSEWVVCRV FEKGPCGKKL HVPNRERFNS 180 SGNESSSPSA QLPPLMDSPP DNSETITTAG ELSQVTSCDP NQTMDPNTHD DILHSLETPM 240 LDFSSSATPY DVFPSGKATL SGINQPTQIA HQIGDSQYPD YCYMPQEQSL RMLMGNHESS 300 AKQIQKAEFS EGREFEADIS SVLYNSDMMQ RMFENQEHSS ASAGHVDTDS MWNY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-52 | 13 | 169 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-52 | 13 | 169 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-52 | 13 | 169 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-52 | 13 | 169 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-52 | 13 | 169 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-52 | 13 | 169 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-52 | 13 | 169 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-52 | 13 | 169 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-52 | 13 | 169 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-52 | 13 | 169 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-52 | 13 | 169 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-52 | 13 | 169 | 17 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-52 | 13 | 169 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-52 | 13 | 169 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.008G037900.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007139532.1 | 0.0 | hypothetical protein PHAVU_008G037900g | ||||
Refseq | XP_007139533.1 | 0.0 | hypothetical protein PHAVU_008G037900g | ||||
Swissprot | Q9FLJ2 | 3e-99 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | V7B0U7 | 0.0 | V7B0U7_PHAVU; Uncharacterized protein | ||||
STRING | XP_007139532.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 3e-99 | NAC domain containing protein 100 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.008G037900.2 |
Entrez Gene | 18621769 |
Publications ? help Back to Top | |||
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