PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Phvul.008G027800.1 | ||||||||
Common Name | PHAVU_008G027800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 244aa MW: 27984.9 Da PI: 10.3145 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 91 | 5.9e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ +qvtfskRr+g+lKKA+E+SvLCda+va+++fs++gkl+eyss Phvul.008G027800.1 9 KRIENKTSQQVTFSKRRTGLLKKAHEISVLCDAQVALVMFSTKGKLFEYSS 59 79***********************************************96 PP | |||||||
2 | K-box | 87.7 | 2.2e-29 | 79 | 169 | 7 | 97 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 + +++ + +++ e+ kL++++e L+r+ R++lG++L++L+lkeLq+LeqqL++slk+iR++Kn+++ ++i+el k+ + lqe+n +L+k+ Phvul.008G027800.1 79 NGTNNDSEGNWSFEYIKLNAKVEVLERNVRNFLGNELDPLNLKELQSLEQQLDTSLKRIRTRKNQVMNQSISELHKRARTLQEQNSKLTKM 169 4455666789******************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.5E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.95 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.07E-31 | 2 | 88 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.81E-39 | 2 | 75 | No hit | No description |
PRINTS | PR00404 | 1.5E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.8E-26 | 83 | 169 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.138 | 86 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 244 aa Download sequence Send to blast |
MGRGRVQLKR IENKTSQQVT FSKRRTGLLK KAHEISVLCD AQVALVMFST KGKLFEYSSE 60 RSMEDVLERY ERYTHTALNG TNNDSEGNWS FEYIKLNAKV EVLERNVRNF LGNELDPLNL 120 KELQSLEQQL DTSLKRIRTR KNQVMNQSIS ELHKRARTLQ EQNSKLTKMK EKEKTMTERP 180 QSVPETLGQN STNLNLCSPQ LLPSQRLLTL SGTLQGRTRV EERGEAQTVP TANSLIPPWM 240 LHI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 1e-20 | 1 | 84 | 1 | 83 | MEF2 CHIMERA |
6byy_B | 1e-20 | 1 | 84 | 1 | 83 | MEF2 CHIMERA |
6byy_C | 1e-20 | 1 | 84 | 1 | 83 | MEF2 CHIMERA |
6byy_D | 1e-20 | 1 | 84 | 1 | 83 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Phvul.008G027800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT098571 | 1e-170 | BT098571.1 Soybean clone JCVI-FLGm-16N7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007139418.1 | 1e-179 | hypothetical protein PHAVU_008G027800g | ||||
Refseq | XP_007139419.1 | 1e-179 | hypothetical protein PHAVU_008G027800g | ||||
Swissprot | D7SMN6 | 2e-89 | FULL_VITVI; Agamous-like MADS-box protein FUL-L | ||||
TrEMBL | V7B0J4 | 1e-177 | V7B0J4_PHAVU; Uncharacterized protein | ||||
STRING | XP_007139418.1 | 1e-178 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF588 | 32 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60910.1 | 1e-76 | AGAMOUS-like 8 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Phvul.008G027800.1 |
Entrez Gene | 18621667 |
Publications ? help Back to Top | |||
---|---|---|---|
|