PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Phvul.007G272800.1 | ||||||||
Common Name | PHAVU_007G272800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 150aa MW: 16623.1 Da PI: 6.5297 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.9 | 1.4e-19 | 19 | 69 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrd ++ +r +lg+f taeeAa+a+++a+ +++g Phvul.007G272800.1 19 KYRGVRRRP-WGKYAAEIRD----SmRHgQRLWLGTFTTAEEAARAYDRAAYAMRG 69 8********.**********....33236*************************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.79E-24 | 19 | 79 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.644 | 19 | 77 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-31 | 19 | 79 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.2E-14 | 19 | 69 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.9E-36 | 19 | 83 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.98E-19 | 19 | 79 | No hit | No description |
PRINTS | PR00367 | 3.5E-11 | 20 | 31 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-11 | 43 | 59 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 150 aa Download sequence Send to blast |
MMNEEGSKGK SKDEEEHVKY RGVRRRPWGK YAAEIRDSMR HGQRLWLGTF TTAEEAARAY 60 DRAAYAMRGP FAVLNFPDQY PPSPAASSSS SSSVNASSSS SSVPSSSSHG RGRGRGRSEE 120 ASEVFEFEYF DDKLLEELLG YDDKNEHGK* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-34 | 16 | 134 | 11 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Phvul.007G272800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 1e-116 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007145842.1 | 1e-105 | hypothetical protein PHAVU_007G272800g | ||||
Swissprot | Q9LTC5 | 8e-37 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | V7BMM3 | 1e-104 | V7BMM3_PHAVU; Uncharacterized protein | ||||
STRING | XP_007145842.1 | 1e-105 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF270 | 33 | 215 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G04370.1 | 1e-23 | Ethylene-responsive element binding factor 14 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Phvul.007G272800.1 |
Entrez Gene | 18627215 |
Publications ? help Back to Top | |||
---|---|---|---|
|