PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G254100.1
Common NamePHAVU_007G254100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C3H
Protein Properties Length: 701aa    MW: 76362.3 Da    PI: 6.1727
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G254100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07276296526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C++f++ G C++Gd C +aHg
  Phvul.007G254100.1 276 PCPDFRK-GACRRGDMCEYAHG 296
                         8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.205.7E-179154IPR020683Ankyrin repeat-containing domain
SMARTSM0024838001140IPR002110Ankyrin repeat
SuperFamilySSF484032.49E-1616139IPR020683Ankyrin repeat-containing domain
CDDcd002042.40E-1416136No hitNo description
PROSITE profilePS5029715.72458165IPR020683Ankyrin repeat-containing domain
PfamPF127964.3E-858127IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00245888IPR002110Ankyrin repeat
PROSITE profilePS5008810.7493128IPR002110Ankyrin repeat
SMARTSM002480.001693125IPR002110Ankyrin repeat
SMARTSM003564.0E-6271297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-4275298IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582276298IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-5276296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4304334IPR000571Zinc finger, CCCH-type
SMARTSM0035643306329IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MMNHLTIETE DSFASLLELA ANNDVEGFKR MIERDPSCVD EVGLWYSRQK GSRRMVNELR  60
TPLMVAASYG SIDILDLILS LSGYDINKPC GLDKSTALHC AASGGAENAV DVVILLLAAG  120
ADPNSVDGNG HRPVDVIVFP PKHESVRNSL EALLQTDDSI GVCNLRVITA PSNAYSPPLS  180
TSPENGSPSA PDFQLKSKLN DGFVSSASEK KEYPVDPSLP DIKNSIYSTD EFRMYSFKVR  240
PCSRAYSHDW TECPFVHPGE NARRRDPRKY HYSCVPCPDF RKGACRRGDM CEYAHGVFEC  300
WLHPAQYRTR LCKDGTSCSR RVCFFAHTAE ELRPLYVSTG SAVPSPRSSS SSAMEFAAAM  360
NMLPGSPSSM SVMSPSPFTP PMSPSANGMS HSSVGWPQPN VPALHLPGSN LHSSRLRSSF  420
NARDIPMDEF DMLPEYDAQQ QLLNEFSCLS KQSNAMNRSG RIKTLTPSNL DDLFSSESSS  480
PRFADPALAS AVFSPTHKSA ILNQFQQQQS LLSPVNTNFS SKNVENPLLQ AASFGVQASG  540
RMSPRNVEPI SPMSSRISVL AQREKQQQFR SLSSRELGSN SATVAAAAAG SPVNSWSKWG  600
PSNGTLDWAV NADELRKHRR SSSFEHGNNS EEPDFSWVQS LVKESPTEIK ENSTTTVSSG  660
AAAGSSSEVS NMSTQMDSVD HAVLGAWLEQ MQLDLVAQQN *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G254100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007145619.10.0hypothetical protein PHAVU_007G254100g
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLV7BKP90.0V7BKP9_PHAVU; Uncharacterized protein
STRINGXP_007145619.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]