PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.007G251900.1 | ||||||||
Common Name | PHAVU_007G251900g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | HSF | ||||||||
Protein Properties | Length: 224aa MW: 25943.6 Da PI: 8.0628 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 101.4 | 8.2e-32 | 41 | 133 | 1 | 102 |
HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 aFl k+y ++ed+++++++sw+++g++fvvl++ efa+++Lp+ F h nf+SF+RQL +YgF+kv +++ weF ++ F+kg+k Phvul.007G251900.1 41 AFLLKTYMLVEDASTNDVVSWNDDGTTFVVLQPAEFARDLLPTLFNHCNFSSFLRQLSTYGFRKVATSR---------WEFCNERFRKGEK 122 69****************************************************************999.........************* PP XXXXXXXXXXX CS HSF_DNA-bind 92 ellekikrkks 102 ell++i+rkks Phvul.007G251900.1 123 ELLCQIRRKKS 133 *********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 6.1E-48 | 38 | 131 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 5.99E-30 | 39 | 131 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.2E-33 | 39 | 131 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.9E-28 | 42 | 131 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-15 | 42 | 65 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-15 | 80 | 92 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-15 | 93 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.20.5.170 | 7.5E-4 | 132 | 194 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MNCGVHHHQP SSISSLTSVS EMEEESETGL LQCMRKLSTP AFLLKTYMLV EDASTNDVVS 60 WNDDGTTFVV LQPAEFARDL LPTLFNHCNF SSFLRQLSTY GFRKVATSRW EFCNERFRKG 120 EKELLCQIRR KKSRVRKRQH TSNIDEDERF LVSAFSSDYA ILMDENKRLK KENGVLHSEL 180 TNMKRKCRDL LDLVTKYSCA MQEGVDQKPL SFRLRLEEVQ GER* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d8k_B | 2e-21 | 40 | 133 | 3 | 107 | Heat shock factor protein 2 |
5d8l_B | 2e-21 | 40 | 133 | 3 | 107 | Heat shock factor protein 2 |
5d8l_D | 2e-21 | 40 | 133 | 3 | 107 | Heat shock factor protein 2 |
5d8l_F | 2e-21 | 40 | 133 | 3 | 107 | Heat shock factor protein 2 |
5d8l_H | 2e-21 | 40 | 133 | 3 | 107 | Heat shock factor protein 2 |
5hdk_A | 2e-21 | 39 | 133 | 7 | 112 | Heat shock factor protein 2 |
5hdk_B | 2e-21 | 39 | 133 | 7 | 112 | Heat shock factor protein 2 |
5hdk_C | 2e-21 | 39 | 133 | 7 | 112 | Heat shock factor protein 2 |
5hdk_D | 2e-21 | 39 | 133 | 7 | 112 | Heat shock factor protein 2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.007G251900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 5e-78 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007145595.1 | 1e-166 | hypothetical protein PHAVU_007G251900g | ||||
Swissprot | O22230 | 5e-56 | HSFB3_ARATH; Heat stress transcription factor B-3 | ||||
TrEMBL | V7BI51 | 1e-165 | V7BI51_PHAVU; Uncharacterized protein | ||||
STRING | XP_007145595.1 | 1e-166 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1592 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41690.1 | 3e-58 | heat shock transcription factor B3 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.007G251900.1 |
Entrez Gene | 18626999 |