PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G211800.1
Common NamePHAVU_007G211800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 259aa    MW: 29354 Da    PI: 8.0187
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G211800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.8e-162774148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT +Ed +lv++++ +G g+W++ a   g++R++k+c++rw++yl
  Phvul.007G211800.1 27 KGPWTVDEDTILVNYIATHGEGHWNSLAPSAGLRRSGKSCRLRWLNYL 74
                        79********************************************97 PP
2Myb_DNA-binding49.41e-1580123146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ T +E+ l++d++ ++G++ W++Ia++++ gRt++++k++w++
  Phvul.007G211800.1  80 RGNITLQEQILILDLHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 123
                         7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.2842274IPR017930Myb domain
SuperFamilySSF466891.01E-2924121IPR009057Homeodomain-like
SMARTSM007172.7E-132676IPR001005SANT/Myb domain
PfamPF002497.6E-152774IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-202881IPR009057Homeodomain-like
CDDcd001671.08E-92974No hitNo description
PROSITE profilePS5129422.89275129IPR017930Myb domain
SMARTSM007171.3E-1379127IPR001005SANT/Myb domain
PfamPF002494.6E-1480123IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-2282127IPR009057Homeodomain-like
CDDcd001674.38E-1084123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDANCGSLVE TQAKMQHSEN EMLGLRKGPW TVDEDTILVN YIATHGEGHW NSLAPSAGLR  60
RSGKSCRLRW LNYLRPDVRR GNITLQEQIL ILDLHSRWGN RWSKIAQHLP GRTDNEIKNY  120
WRTRVIKQAK QLRCDVNSKQ FRDTLRYVWM PRLLERVQPT SQILHPQMDP GPSEIPGFLQ  180
QTGFHGLDSV TEWDKGNHPT GSYSDSSSVE LQVYSNSDHS DSSGSGSGFD MWGSLNMQML  240
EEGSVGVNRW KVCGMISN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-23111219120MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G211800.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-85AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007145121.10.0hypothetical protein PHAVU_007G211800g
SwissprotQ10MB44e-81MYB2_ORYSJ; Transcription factor MYB2
TrEMBLV7BHX30.0V7BHX3_PHAVU; Uncharacterized protein
STRINGXP_007145121.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.12e-79myb domain protein 112
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]