PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G205700.1
Common NamePHAVU_007G205700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family M-type_MADS
Protein Properties Length: 160aa    MW: 18355.4 Da    PI: 9.3725
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G205700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.63.7e-141150342
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                        i++ + r+ t+ kR++gi+KK +EL +LC++ ++ ii+s+
  Phvul.007G205700.1 11 ISDVTARKSTYKKRKKGIIKKVSELTILCGIPACAIIASP 50
                        8999*********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.741149IPR002100Transcription factor, MADS-box
SMARTSM004329.3E-20160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-21182IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-7323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-131150IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-72338IPR002100Transcription factor, MADS-box
PROSITE profilePS512976.56193159IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MTRQKVKLAY ISDVTARKST YKKRKKGIIK KVSELTILCG IPACAIIASP FEAKPEIWPD  60
PEGAKQVIQR YLDASVIDES KNVNQESFLM QKIAKAQEQL KKLRQENQEK EKILSMFKYM  120
QGEEDLPTDV QELKQLNKLI ENSMKETKNK MDELNCESM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12125KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G205700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-178AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007145049.11e-112hypothetical protein PHAVU_007G205700g
TrEMBLV7BJ481e-111V7BJ48_PHAVU; Uncharacterized protein
STRINGXP_007145049.11e-112(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13237929
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26630.13e-36M-type_MADS family protein