PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.007G149700.1 | ||||||||
Common Name | PHAVU_007G149700g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | TCP | ||||||||
Protein Properties | Length: 189aa MW: 20012.6 Da PI: 8.2861 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 111.7 | 1.1e-34 | 41 | 118 | 3 | 80 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaessss 80 + +++++++hTkv+gR+RRvR++ +caar+F+L++eLG+ +d++tieWLl+ a+p+i+++tg+++ ++ ++++ s Phvul.007G149700.1 41 AVTRSTKDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRHAEPSIIAATGSGTVPSAPISSVATSI 118 55789**********************************************************777773332222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.2E-30 | 45 | 146 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.04 | 46 | 100 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MTSHVVLQNF PHSETKLSTT TTSDSPPTAP SLAVTKRTSA AVTRSTKDRH TKVNGRGRRV 60 RMPPLCAARI FQLTRELGHR SDGETIEWLL RHAEPSIIAA TGSGTVPSAP ISSVATSIPS 120 SESSVSVPVV GGQGMFSMAP PSCRLDLSPP PGMEFAASNG YRHMPFTALL LQPATVEDNQ 180 NDESLGEH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.007G149700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007144360.1 | 1e-135 | hypothetical protein PHAVU_007G149700g | ||||
Swissprot | Q9SJK7 | 3e-42 | TCP11_ARATH; Transcription factor TCP11 | ||||
TrEMBL | V7BET0 | 1e-134 | V7BET0_PHAVU; Uncharacterized protein | ||||
STRING | XP_007144360.1 | 1e-134 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3819 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37000.1 | 1e-42 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.007G149700.1 |
Entrez Gene | 18625946 |