PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G135300.1
Common NamePHAVU_007G135300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 403aa    MW: 44331.9 Da    PI: 8.7386
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G135300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.4e-19237286356
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         +kGVr+++ +g+WvAeIr p++   r+r++lg+f+tae+Aa a++ a+  l+ge
  Phvul.007G135300.1 237 FKGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEDAAIAYDTAAYILRGE 286
                         8******9.**********955...5************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.28E-30235295No hitNo description
SuperFamilySSF541714.45E-22236294IPR016177DNA-binding domain
SMARTSM003802.0E-33236299IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-31236294IPR001471AP2/ERF domain
PROSITE profilePS5103222.049236293IPR001471AP2/ERF domain
PfamPF008471.1E-11237286IPR001471AP2/ERF domain
PRINTSPR003675.8E-10237248IPR001471AP2/ERF domain
PRINTSPR003675.8E-10259275IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MKGTFLKKEI FTQKKFPTCL QEMATGSKFL DTAIMVGGSH SLTAYLHVLR SGATSSITSS  60
QQLLSCSNST SMKEEAPLAT WISHIPAKFN GPQDIKNVIE KNQSNSIFPA SDTKNSSIPL  120
NLLETLPPLT MAPCFDEPVA SSASSSAPPN FPNLTLVLQE PSMVYSSNMK GGEVMSVTSD  180
PTYQVPHFGQ NQHQAGSDAY KMDKINLTNS RSKSFNENWL STTRTQPMKY GGRGKLFKGV  240
RQRHWGKWVA EIRLPRNRTR VWLGTFDTAE DAAIAYDTAA YILRGEYAQL NFPDLKHVIQ  300
ANSLNGTTAA LVEAKLQAIS QGVSSQRKPT DSPAGSSNKH SDENGKLKST NAKDSTMKEW  360
QFDTDRSKST HHEISDVETV QLSRMPSLDM DIIWDELLVS NS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-21232293163ATERF1
3gcc_A5e-21232293163ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G135300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007144182.10.0hypothetical protein PHAVU_007G135300g
TrEMBLV7BI850.0V7BI85_PHAVU; Uncharacterized protein
STRINGXP_007144182.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101023141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.13e-52ERF family protein