PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G118500.1
Common NamePHAVU_007G118500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C3H
Protein Properties Length: 445aa    MW: 48721 Da    PI: 8.6005
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G118500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.61.6e-115379127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                        ++++ C+++ rtG C++G++C+F+H+p
  Phvul.007G118500.1 53 PGEPDCSYYIRTGLCRFGATCRFNHPP 79
                        5789*********************97 PP
2zf-CCCH39.21.2e-12100124327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C+++++tGtCk+G++CkF+H++
  Phvul.007G118500.1 100 QPECQYYLKTGTCKFGATCKFHHPK 124
                         799********************96 PP
3zf-CCCH38.51.9e-12146170327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C +++rtG+Ck+G++CkF+H++
  Phvul.007G118500.1 146 EPECTYYLRTGQCKFGNTCKFHHPQ 170
                         799********************97 PP
4zf-CCCH36.48.8e-12305330126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +++++C+f+++tG Ck+G+ C+F+H+
  Phvul.007G118500.1 305 PGQPECQFYMKTGDCKFGAVCRFHHP 330
                         5789*********************8 PP
5zf-CCCH38.12.7e-12351377127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++lC f++r+G+Ck+G++CkF H++
  Phvul.007G118500.1 351 PGEPLCVFYSRYGICKFGPSCKFDHPM 377
                         589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.1E-55279IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5875280IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-85479IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-55780IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-45878IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-697124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.1497125IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-10100124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6101126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-5103124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.939143171IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-6143170IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-10146170IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6146171IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4149169IPR000571Zinc finger, CCCH-type
SMARTSM003568.0E-6304331IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.352304332IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-8306330IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5308333IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4310332IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7350377IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821350378IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-9352377IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5353377IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-4355375IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MEKKKLNLII PNPQPHGIIT RRNSPISQGQ DSLWVMNLRT SETMDSGAYP ERPGEPDCSY  60
YIRTGLCRFG ATCRFNHPPN RKLAIATARM IGEFPERIGQ PECQYYLKTG TCKFGATCKF  120
HHPKDQTGIA GRVSLNTLGY PLRPNEPECT YYLRTGQCKF GNTCKFHHPQ PSNMMLSLQD  180
SSLYPTVHSP TTPGQQSFAG GITNWARASY IPSPRWQGPS SYAPLILPQG VVSVPGWSAY  240
SGQVGSISNS DSLQQAMRNG QTYGTSRQGE LANTGTHGAY SQFRSGTVPV GFYALQRENI  300
FPERPGQPEC QFYMKTGDCK FGAVCRFHHP HERLIPAPDC VLSPMGLPLR PGEPLCVFYS  360
RYGICKFGPS CKFDHPMGIF TYNISASPSA DAPSKHLLRS SSGTAALSLS SEGLVESSSA  420
TPRRLSLSET RQIPSGDGDI DDDG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G118500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007143976.10.0hypothetical protein PHAVU_007G118500g
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLV7BEF20.0V7BEF2_PHAVU; Uncharacterized protein
STRINGXP_007143976.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-173zinc finger protein 1