PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.007G095300.1 | ||||||||
Common Name | PHAVU_007G095300g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | GATA | ||||||||
Protein Properties | Length: 355aa MW: 37742.6 Da PI: 6.4957 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 53.9 | 2.4e-17 | 260 | 293 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C tkTp+WR gp g+ktLCnaCG+++++ + Phvul.007G095300.1 260 CMHCEITKTPQWRAGPMGPKTLCNACGVRFKSGR 293 99*****************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 3.3E-73 | 3 | 347 | IPR016679 | Transcription factor, GATA, plant |
SMART | SM00401 | 3.1E-15 | 254 | 304 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.24 | 254 | 290 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.51E-14 | 258 | 317 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.9E-14 | 258 | 291 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.51E-13 | 259 | 316 | No hit | No description |
Pfam | PF00320 | 5.8E-15 | 260 | 293 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 260 | 285 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MVGPNFMDEI DCGSFFDHID DLLDFPVEDV DGGAPTLPSV AAAAAGNCNS LASIWPAGSD 60 SFPGSDSVFS GNSASDLSAE LSVPYEDIVQ LEWLSNFVED SFCGGSLTMK KVDEPSCTTT 120 KEDSVHNQFH TSSPVSVLES SSSCSGGKTV PAPPRSPEVY IPVPCGRARS KRPRPATFNP 180 RPAMNLISPA SSFVGENMQA NVISSKASSD SENFAESQLV AKMPKQGCGE MKKKKKVKVT 240 LGAGPGDSNN QNGLQPVRKC MHCEITKTPQ WRAGPMGPKT LCNACGVRFK SGRLYPEYRP 300 AASPTFCPSV HSNSHKKVLE MRCRGIDKSG FAMNAAASPE LIPNTNSSLT LEYM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 170 | 174 | KRPRP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.007G095300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007143712.1 | 0.0 | hypothetical protein PHAVU_007G095300g | ||||
TrEMBL | V7BGX1 | 0.0 | V7BGX1_PHAVU; GATA transcription factor | ||||
STRING | XP_007143712.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4887 | 33 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32890.1 | 5e-43 | GATA transcription factor 9 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.007G095300.1 |
Entrez Gene | 18625383 |