PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G085600.1
Common NamePHAVU_007G085600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NAC
Protein Properties Length: 553aa    MW: 62059.3 Da    PI: 4.4017
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G085600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.93.3e-52201462128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                         +pGfrFhPtdeelv++yLk+k+ gk+l+l +vi+e+d+y+++P++Lp +  +k+++++w+fF++rd+ky++g r+nrat++gyWkatg+d+
  Phvul.007G085600.1  20 MPGFRFHPTDEELVMYYLKRKICGKRLKL-NVIRETDVYRWDPEELPgQsILKTGDRQWFFFCPRDRKYPNGARSNRATRHGYWKATGRDR 109
                         69***************************.99**************96446788999********************************** PP

                 NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +v++ ++++vg+kktLvfy grap+g++tdWvmhey++
  Phvul.007G085600.1 110 NVIC-NSRAVGVKKTLVFYIGRAPSGTRTDWVMHEYTM 146
                         ****.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-5915169IPR003441NAC domain
PROSITE profilePS5100554.25519169IPR003441NAC domain
PfamPF023651.4E-2721145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MGEASGDGNA DCFSQMMASM PGFRFHPTDE ELVMYYLKRK ICGKRLKLNV IRETDVYRWD  60
PEELPGQSIL KTGDRQWFFF CPRDRKYPNG ARSNRATRHG YWKATGRDRN VICNSRAVGV  120
KKTLVFYIGR APSGTRTDWV MHEYTMDEEE LKRCQGVKEY YALYKVFKKS GAGPKNGEQY  180
GAPFSEQEWA ADDDIVDFNI KITDQEAPNV VSENGNVLHP LLDDEINDII REILDDELVL  240
DQQHVNGFLD FPQVVTEETQ STVVDQFSEA VMFPETINSC CEFFDVQPSF EFNQPVTSHL  300
QVSEASEVSS ASNVKTKGLD LDEDGFLEIN DLIDTEPTLA NVENPVEHLR FEDGLSELDL  360
YQDAEMFLRD LGANEYTNAL VSNNIESQTY QLLCNPEDAN QTVGEFWIHG ERNTLSPSEE  420
GFVDSFSLPS AGVVCESLSF PEEGNYNQSS TVEDVSTSSF SSSLWAFVES IPTTPASAAE  480
SALVNRALNR MSSFSRVKIR HTNIAAGKET ATTKKAGRKG FSFLFFPILI ALCAFLWVFV  540
GSLRLLGRCI SP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-502114617140Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13746KRKICGKRLK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G085600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6573050.0KF657305.1 Glycine max NAC transcription factor (SNAC38) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007143604.10.0hypothetical protein PHAVU_007G085600g
TrEMBLV7BFC30.0V7BFC3_PHAVU; Uncharacterized protein
STRINGXP_007143604.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61313451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-123NAC domain containing protein 17