PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G074500.1
Common NamePHAVU_007G074500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB_related
Protein Properties Length: 306aa    MW: 34288.9 Da    PI: 9.6816
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G074500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.61.4e-135195147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Phvul.007G074500.1 51 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 95
                        789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.97E-1745101IPR009057Homeodomain-like
PROSITE profilePS5129415.40846100IPR017930Myb domain
TIGRFAMsTIGR015571.3E-184998IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.0E-649101IPR009057Homeodomain-like
SMARTSM007175.3E-115098IPR001005SANT/Myb domain
PfamPF002492.4E-115195IPR001005SANT/Myb domain
CDDcd001671.70E-85396No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MVSKNSNPSE ASYMDPSAMS LLPFATAVTA TDALENPAKK TRKPYTITKS RESWTEQEHD  60
KFLEALQLFD RDWKKIEAFV GSKTVIQIRS HAQKYFLKVQ KNGTSEHLPP PRPKRKAAHP  120
YPQKASKNVP VLSQVSGSFQ SSSALLEPGY IIKHDSSAML KTPIINTAWS NNSRQKSANL  180
LHGHKVNSCC SNSESPRAQL VGESNGQGNN IHPLRVLPDF SEVYGFIGSV FDPNVTGHLQ  240
KLKRMDPIDV ETVLLLMRNL TINLARPEFE DHRRLLASYE VEPESDKYYN NADRNMLDLQ  300
LKSVT*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G074500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007143469.10.0hypothetical protein PHAVU_007G074500g
RefseqXP_007143470.10.0hypothetical protein PHAVU_007G074500g
SwissprotQ8H0W31e-112RVE6_ARATH; Protein REVEILLE 6
TrEMBLV7BEZ00.0V7BEZ0_PHAVU; Uncharacterized protein
STRINGXP_007143469.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11193396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.12e-93MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]