PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G072400.1
Common NamePHAVU_007G072400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 675aa    MW: 74490.1 Da    PI: 8.5733
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G072400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.3e-057799223
                        EETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                        kC++C++ F ++ n++rHir+ H
  Phvul.007G072400.1 77 KCNKCSREFCSPINYRRHIRVqH 99
                        7*******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.32876104IPR007087Zinc finger, C2H2
PROSITE patternPS0002807899IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MPVAKLPASG TTGFTKTDDG NDSLDTIFRQ AIGKEPLLSF PRAGDSPVQW IQLLHALDQQ  60
ELPGWPLLSP VKVQLQKCNK CSREFCSPIN YRRHIRVQHR LKKLDKDSKK NRELLGAFWD  120
KLSVEEAKEV VSFKNVMLEE VPGSSILEAL TTLRKQGFSS LPQYYLRAGS ALLNIVQSRP  180
SSFPISSQEL FSILDDSSEK TFLVGSAVSM QRYVFDGEAG KIGLEQKNLV ACTSFLLEQK  240
LVKAWLADKD AEALRCQKLL VEEEEAAQKR KADILERKRQ KKLRQKEHKA KEQIEDDTET  300
KGNISSAGED VSPGEASLGT CDFDEHNPDI FADHSPPPHV TSHYQDTNEV IEGDTLSGYD  360
CDTDQYTERQ TLQGHNRRGT MPARWQGLPK SQWARANGLN AGQNSQPSKV GVIQKHRTSH  420
DLRVAPIVNG SKVWSRKPKA ETNGVVLKAK LLKEPDKVKN HEVLIGSVSV SLGNCCNSGG  480
NFVAPQRDCL AGNLSKLNTA QEKPGSNGRL TVKLWRPVSQ HGTKDPFPLQ NGGTEADVIH  540
GKFDENSSGQ SSLRLCSVEG SDIDFGDNFS HNVAKVDLES LRLSSHAAKS FLAQRWKEAI  600
SSNHVKLVFT PDSEPRGEQP VQDCELAAAY LSSDADRCTE NRLPATSGVA RSKPKTKPEK  660
GMKIKYIPKQ KAAA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275282ERKRQKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G072400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007143440.10.0hypothetical protein PHAVU_007G072400g
TrEMBLV7BC710.0V7BC71_PHAVU; Uncharacterized protein
STRINGXP_007143440.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45172739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.11e-150C2H2-like zinc finger protein