PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G033200.1
Common NamePHAVU_007G033200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C3H
Protein Properties Length: 366aa    MW: 40310 Da    PI: 7.9359
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G033200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.53e-15281306126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +ktelC+ +++tGtC+yGd C+FaHg
  Phvul.007G033200.1 281 FKTELCNKWQETGTCPYGDHCQFAHG 306
                         79***********************8 PP
2zf-CCCH18.34.2e-06319343125
                         --S---SGGGGTS.--TTTTT-SS-S CS
             zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaH 25 
                         ykte Cr  ++ G  C+yG rC+F H
  Phvul.007G033200.1 319 YKTEVCRMVLA-GvVCPYGHRCHFRH 343
                         9**********.66**********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.106.0E-19276313IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-11277312IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.004280308IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-9280307IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-12281306IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-8314348IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-11314347IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.803318346IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-4318345IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MLNKDACSPS SNGGFGPVAA SGQMPSNGGY SSLYSALSND NLPSLSANCS NGGGVSLYPY  60
SESTPQYDSC VIQKHQDMVN RQSMCLNRLV ETSKEVDALR QENGQLRTAN KELQKQLHLV  120
IQASLESQFA AAGSGSSGQT QPTLFDVLHG FRSLHIGEGK ENYADWNNNN NHNHNNIMNN  180
NNNNKDLQEV SDESPTSVME NNVVEVERFS LPKSISVRSN GYLKMAQSAA LATNNNATRN  240
KGATRPRATA TPPEAVQKVY VRGGQKEEEP MEMVVYNQGM FKTELCNKWQ ETGTCPYGDH  300
CQFAHGIGEL RPVIRHPRYK TEVCRMVLAG VVCPYGHRCH FRHALTEQEK AVVSQPKPRT  360
MKLER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-22281347470Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G033200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007142975.10.0hypothetical protein PHAVU_007G033200g
SwissprotQ9C9F51e-84C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLV7BAW90.0V7BAW9_PHAVU; Uncharacterized protein
STRINGXP_007142975.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.18e-85C3H family protein