PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G019700.1
Common NamePHAVU_007G019700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family B3
Protein Properties Length: 268aa    MW: 30894 Da    PI: 5.8817
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G019700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.63.4e-1615961198
                        HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                        +++ rl +p+kf  ++g+    +  l ++ ++g +W+v+      +g+++l+kGWkeFv+   L++g f+ Fk++g+s+   +v +++
  Phvul.007G019700.1 15 TNLERLKIPNKFSCKYGSG--LPNPLFMKPPDGTEWKVNW--AEDKGEIWLEKGWKEFVEHYSLDQGHFIFFKYEGTSQI--HVIILD 96
                        456789******9899655..5556***************..********************************997666..777776 PP
2B339.97.5e-13170264198
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                         ff+v+++++++++ rl++p      +g+k e      +  +  r W+vkli +++s    + +++GW  F ++ +L++gD++vF+l+++++
  Phvul.007G019700.1 170 FFTVFIRPSHTATYRLSVPDLRG-LIGEK-E---RYAMLELGERGWKVKLIANNSSYFshHRFSTGWYLFLRETELQSGDVCVFELISKED 255
                         78888888888888888887654.34433.3...377888999*******98888877889**************************8877 PP

                         E..EEEEE- CS
                  B3  90 felvvkvfr 98 
                           ++v+vf+
  Phvul.007G019700.1 256 CVFKVHVFK 264
                         768999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.014598IPR003340B3 DNA binding domain
SuperFamilySSF1019361.14E-207105IPR015300DNA-binding pseudobarrel domain
CDDcd100175.31E-15896No hitNo description
SMARTSM010195.4E-14898IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.2E-21898IPR015300DNA-binding pseudobarrel domain
PfamPF023622.9E-131595IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-15166265IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-13167265IPR015300DNA-binding pseudobarrel domain
CDDcd100171.68E-11169264No hitNo description
PROSITE profilePS5086310.25170266IPR003340B3 DNA binding domain
SMARTSM010190.002170266IPR003340B3 DNA binding domain
PfamPF023623.1E-10170265IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MASLPINFFK VILKTNLERL KIPNKFSCKY GSGLPNPLFM KPPDGTEWKV NWAEDKGEIW  60
LEKGWKEFVE HYSLDQGHFI FFKYEGTSQI HVIILDQSAL EIDYPCGNGD ENDNLVKTEE  120
ESDMVLDEGQ DVKDEQIRGE KCGERTSSLN RPTQSRAREV ACNFVSCNPF FTVFIRPSHT  180
ATYRLSVPDL RGLIGEKERY AMLELGERGW KVKLIANNSS YFSHHRFSTG WYLFLRETEL  240
QSGDVCVFEL ISKEDCVFKV HVFKNHT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A7e-1314026418141B3 domain-containing transcription factor VRN1
4i1k_B7e-1314026418141B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G019700.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007142821.10.0hypothetical protein PHAVU_007G019700g
TrEMBLV7BB510.0V7BB51_PHAVU; Uncharacterized protein
STRINGXP_007142821.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.17e-22B3 family protein