PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G019500.1
Common NamePHAVU_007G019500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family B3
Protein Properties Length: 329aa    MW: 38090.2 Da    PI: 10.3054
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G019500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.63.6e-1689183198
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f+ v+ +s+  + + l++p +f+ + ++ ke +  +++  ++ ++W++++++ ++++++ l++GW +Fvk+n+Lk g ++vF+ +++ + +
  Phvul.007G019500.1  89 FIRVMQRSHIIR-KFLTMPADFI-TVEERKE-NHRVSVWISEDKTWDMNVNVYRSKKEVSLGSGWANFVKDNNLKKGNVCVFEKIKNPGLS 176
                         444554455555.559******9.5544443.3479999999********9999999**************************99988888 PP

                         .EEEEE- CS
                  B3  92 lvvkvfr 98 
                         ++v ++r
  Phvul.007G019500.1 177 FRVVIYR 183
                         8888776 PP
2B339.97.5e-132443221595
                         -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                  B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                          +++p +f+++h+++++ +  + l+   +r+W vkl +   ++++ +  +GW++F ++ ++++gD++ F+l+++++f + v+
  Phvul.007G019500.1 244 TVCIPEQFIRNHMMQNAAK--VGLRV-GNRTWPVKLEHyPENQCHKLCYSGWSKFMRECKVNVGDVCNFELVDKDTFVFQVR 322
                         479*********8886664..44443.56*******6556677778899**********************99888855554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.0E-1881183IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-1984183IPR015300DNA-binding pseudobarrel domain
CDDcd100173.23E-1787183No hitNo description
PROSITE profilePS5086313.01488185IPR003340B3 DNA binding domain
PfamPF023626.3E-1389183IPR003340B3 DNA binding domain
SMARTSM010191.5E-789185IPR003340B3 DNA binding domain
SMARTSM010196.8E-10237325IPR003340B3 DNA binding domain
CDDcd100171.53E-10239325No hitNo description
Gene3DG3DSA:2.40.330.104.6E-14243322IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-13244327IPR015300DNA-binding pseudobarrel domain
PfamPF023625.9E-11244322IPR003340B3 DNA binding domain
PROSITE profilePS508639.982247325IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
NGSSFRQCKR VRFSVPSSPS TKKEKIHPRK NPNSYPTQDV ETKYAESERT TVDERGRRRN  60
RRCSRSKVKT ESGTALERAK SFISENPFFI RVMQRSHIIR KFLTMPADFI TVEERKENHR  120
VSVWISEDKT WDMNVNVYRS KKEVSLGSGW ANFVKDNNLK KGNVCVFEKI KNPGLSFRVV  180
IYRDAQESSP SNFSANESKE TRPQKSSADR GSDGVPKNVF YDSGFRRYNN EISENHFALS  240
VLKTVCIPEQ FIRNHMMQNA AKVGLRVGNR TWPVKLEHYP ENQCHKLCYS GWSKFMRECK  300
VNVGDVCNFE LVDKDTFVFQ VRVARCID*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G019500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007142819.10.0hypothetical protein PHAVU_007G019500g, partial
TrEMBLV7BD390.0V7BD39_PHAVU; Uncharacterized protein (Fragment)
STRINGXP_007142819.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14649515
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-14B3 family protein